RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 NDPQ00604 133 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 IL17RELQ6ZVW7 336 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 CHAC1Q9BUX1 264 aa9.66□□□□□ -0.86
HDAC4-208ENST00000463007 G3V4G9 280 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 CCL21O00585 134 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 MFAP4P55083 255 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 WFDC2Q14508 124 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 DYNAPQ8N1N2 210 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 NPFFR1Q9GZQ6 430 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 HIF1ANQ9NWT6 349 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 C21orf62Q9NYP8 219 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 ETDBQ3ZM63 59 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 LINC00527Q9UJ94 153 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 NACAE9PAV3 2078 aa9.65□□□□□ -0.86
HDAC4-208ENST00000463007 DEFB1P60022 68 aa9.65□□□□□ -0.87
HDAC4-208ENST00000463007 MRPL35Q9NZE8 188 aaKnown RBP9.65□□□□□ -0.87
HDAC4-208ENST00000463007 TRBV25-1A0A075B6N4 114 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 OR11H6Q8NGC7 330 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 OR9G4Q8NGQ1 327 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 CFHR4Q92496 578 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 VPS13CQ709C8 3753 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 ITPR1Q14643 2758 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 ODF3BA8MYP8 253 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 TGFAP01135 160 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 OR4X2Q8NGF9 303 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 ARPC1AQ92747 370 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 RNF5Q99942 180 aa9.64□□□□□ -0.87
HDAC4-208ENST00000463007 C2CD3Q4AC94 2353 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 WI2-2373I1.2A0A1W2PRP0 233 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 IGKCP01834 107 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 Q6AWC8 147 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 MAPKAPK5-AS1Q8N8E1 139 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 FANCD2OSQ96PS1 177 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 HIST1H4GQ99525 98 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 DTX2Q86UW9 622 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 SMIM17P0DL12 118 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 HOXB4P17483 251 aaPredicted RBP9.63□□□□□ -0.87
HDAC4-208ENST00000463007 BMI1P35226 326 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 EMP1P54849 157 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 ODF1Q14990 250 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 HIVEP3Q5T1R4 2406 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 ZNF562Q6V9R5 426 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 DPM3Q9P2X0 92 aa9.63□□□□□ -0.87
HDAC4-208ENST00000463007 SETD2Q9BYW2 2564 aaPredicted RBP9.62□□□□□ -0.87
HDAC4-208ENST00000463007 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.62□□□□□ -0.87
HDAC4-208ENST00000463007 RPL7P18124 248 aaKnown RBP9.62□□□□□ -0.87
HDAC4-208ENST00000463007 SCGB2A2Q13296 93 aa9.62□□□□□ -0.87
HDAC4-208ENST00000463007 ZNF493Q6ZR52 646 aa9.62□□□□□ -0.87
HDAC4-208ENST00000463007 SRSF8Q9BRL6 282 aaKnown RBP9.62□□□□□ -0.87
HDAC4-208ENST00000463007 TSSC4Q9Y5U2 329 aaPredicted RBP9.62□□□□□ -0.87
HDAC4-208ENST00000463007 A0A1B0GW15 77 aa9.62□□□□□ -0.87
HDAC4-208ENST00000463007 A0A1W2PPR1 153 aa9.62□□□□□ -0.87
HDAC4-208ENST00000463007 MRPS12O15235 138 aaKnown RBP9.62□□□□□ -0.87
HDAC4-208ENST00000463007 SAMD13Q5VXD3 122 aa9.62□□□□□ -0.87
HDAC4-208ENST00000463007 M0R381 172 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 CLEC3BP05452 202 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 AZU1P20160 251 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 SPANXN1Q5VSR9 72 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 CYSLTR1Q9Y271 337 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 SMAD5-AS1Q9Y6J3 95 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 FABP5P3A8MUU1 101 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 RNF185Q96GF1 192 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 HHLA3Q9XRX5 114 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 INSL3P51460 131 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 C5orf64Q2M2E5 130 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 CLEC19AQ6UXS0 136 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 NPBQ8NG41 125 aa9.61□□□□□ -0.87
HDAC4-208ENST00000463007 H3BVH4 76 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 RPS20P60866 119 aaKnown RBP9.6□□□□□ -0.87
HDAC4-208ENST00000463007 RPL11P62913 178 aaKnown RBP9.6□□□□□ -0.87
HDAC4-208ENST00000463007 M0R1W7 72 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 C15orf32Q32M92 178 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 LYPD1Q8N2G4 141 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 MYOZ3Q8TDC0 251 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 GLMPQ8WWB7 406 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 ZNF479Q96JC4 524 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 C11orf21Q9P2W6 132 aa9.6□□□□□ -0.87
HDAC4-208ENST00000463007 G3V318 75 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 DPM2O94777 84 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 CTSGP08311 255 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 ATP5G2Q06055 141 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 NEGR1Q7Z3B1 354 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 IGHV3OR16-10A0A075B7F0 116 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 F8W735 103 aaPredicted RBP9.59□□□□□ -0.87
HDAC4-208ENST00000463007 IGF1P05019 195 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 CFAP161Q6P656 301 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 RAB1BQ9H0U4 201 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 USP9YO00507 2555 aaPredicted RBP9.59□□□□□ -0.87
HDAC4-208ENST00000463007 IGHG4P01861 327 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 OR5A1Q8NGJ0 315 aa9.59□□□□□ -0.87
HDAC4-208ENST00000463007 U3KQK5 164 aa9.58□□□□□ -0.88
HDAC4-208ENST00000463007 LOC107984156A0A0G2JMH3 177 aa9.58□□□□□ -0.88
HDAC4-208ENST00000463007 LINC01548A6NM66 108 aa9.58□□□□□ -0.88
HDAC4-208ENST00000463007 MGPP08493 103 aa9.58□□□□□ -0.88
HDAC4-208ENST00000463007 PRTN3P24158 256 aa9.58□□□□□ -0.88
HDAC4-208ENST00000463007 ARL17AQ8IVW1 177 aa9.58□□□□□ -0.88
HDAC4-208ENST00000463007 Q8N6K4 173 aa9.58□□□□□ -0.88
HDAC4-208ENST00000463007 IGKV3D-20A0A0C4DH25 116 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 C1orf122Q6ZSJ8 110 aa9.57□□□□□ -0.88
HDAC4-208ENST00000463007 CSMD2Q7Z408 3487 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms