RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PRO0255Q9UI72 69 aa10.99□□□□□ -0.65
COL7A1-204ENST00000462475 TNFRSF18Q9Y5U5 241 aa10.99□□□□□ -0.65
COL7A1-204ENST00000462475 NBEAP1P0C6P0 100 aa10.98□□□□□ -0.65
COL7A1-204ENST00000462475 CRYBA4P53673 196 aa10.98□□□□□ -0.65
COL7A1-204ENST00000462475 NHLH2Q02577 135 aa10.98□□□□□ -0.65
COL7A1-204ENST00000462475 FHL2Q14192 279 aa10.98□□□□□ -0.65
COL7A1-204ENST00000462475 PHYHIPLQ96FC7 376 aa10.98□□□□□ -0.65
COL7A1-204ENST00000462475 OR10J4P0C629 311 aa10.97□□□□□ -0.65
COL7A1-204ENST00000462475 OR5C1Q8NGR4 320 aa10.97□□□□□ -0.65
COL7A1-204ENST00000462475 FXYD5Q96DB9 178 aa10.97□□□□□ -0.65
COL7A1-204ENST00000462475 OR51M1Q9H341 326 aa10.97□□□□□ -0.65
COL7A1-204ENST00000462475 HHLA3Q9XRX5 114 aa10.97□□□□□ -0.65
COL7A1-204ENST00000462475 VPS13BQ7Z7G8 4022 aa10.97□□□□□ -0.65
COL7A1-204ENST00000462475 PRAF2O60831 178 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 PFDN1O60925 122 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 DNAH10OSP0CZ25 163 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 ZNF138P52744 262 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 ERVFC1-1P60608 527 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 ZNF415Q09FC8 603 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 MUC21Q5SSG8 566 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 LYPD5Q6UWN5 251 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 MARVELD1Q9BSK0 173 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 PAXXQ9BUH6 204 aa10.96□□□□□ -0.65
COL7A1-204ENST00000462475 SIX6O95475 246 aa10.95□□□□□ -0.66
COL7A1-204ENST00000462475 SFTA3P0C7M3 94 aa10.95□□□□□ -0.66
COL7A1-204ENST00000462475 SLAQ13239 276 aa10.95□□□□□ -0.66
COL7A1-204ENST00000462475 MRPL23Q16540 153 aaKnown RBP10.95□□□□□ -0.66
COL7A1-204ENST00000462475 MRPL32Q9BYC8 188 aaKnown RBP10.95□□□□□ -0.66
COL7A1-204ENST00000462475 PGPEP1Q9NXJ5 209 aa10.95□□□□□ -0.66
COL7A1-204ENST00000462475 OR5AC2Q9NZP5 309 aa10.95□□□□□ -0.66
COL7A1-204ENST00000462475 TRBV7-9A0A0J9YWB2 115 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 EPM2AB3EWF7 344 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 E5RGE8 158 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 INMT-MINDY4F8WBC2 141 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 EREGO14944 169 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 NEGR1Q7Z3B1 354 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 ZNF479Q96JC4 524 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 WDR61Q9GZS3 305 aaKnown RBP10.94□□□□□ -0.66
COL7A1-204ENST00000462475 MDFICQ9P1T7 246 aa10.94□□□□□ -0.66
COL7A1-204ENST00000462475 A0A087WTM6 91 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 TRGV4A0A0C4DH28 118 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 H0YIZ8 118 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 K7EQD1 137 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 OR7C2O60412 319 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 XGP55808 180 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 ZNF266Q14584 549 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 LRRC37A5PQ49AS3 106 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 CDPF1Q6NVV7 123 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 WFDC10BQ8IUB3 73 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 SLC25A31Q9H0C2 315 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 MYCBP2O75592 4640 aa10.93□□□□□ -0.66
COL7A1-204ENST00000462475 SRIP30626 198 aa10.92□□□□□ -0.66
COL7A1-204ENST00000462475 RANP62826 216 aaKnown RBP10.92□□□□□ -0.66
COL7A1-204ENST00000462475 NFE4Q86UQ8 179 aa10.92□□□□□ -0.66
COL7A1-204ENST00000462475 KCNIP2Q9NS61 270 aa10.92□□□□□ -0.66
COL7A1-204ENST00000462475 LY96Q9Y6Y9 160 aa10.92□□□□□ -0.66
COL7A1-204ENST00000462475 RBAKDNA6NC62 111 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 GYPEP15421 78 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 CSN1S1P47710 185 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 KRTAP10-1P60331 282 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 UBE2L3P68036 154 aaKnown RBP10.91□□□□□ -0.66
COL7A1-204ENST00000462475 TMEM183BQ1AE95 376 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 Q6AWC8 147 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 TMEM183AQ8IXX5 376 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 LYPD1Q8N2G4 141 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 OR10G4Q8NGN3 311 aa10.91□□□□□ -0.66
COL7A1-204ENST00000462475 IQCF2Q8IXL9 164 aa10.9□□□□□ -0.66
COL7A1-204ENST00000462475 PCNPQ8WW12 178 aaKnown RBP10.9□□□□□ -0.66
COL7A1-204ENST00000462475 RASL10AQ92737 203 aa10.9□□□□□ -0.66
COL7A1-204ENST00000462475 NMES1Q9C002 83 aa10.9□□□□□ -0.66
COL7A1-204ENST00000462475 MSRB1Q9NZV6 116 aa10.9□□□□□ -0.66
COL7A1-204ENST00000462475 TRGV11A0A075B6L2 103 aa10.89□□□□□ -0.67
COL7A1-204ENST00000462475 TRAV9-2A0A087WT02 112 aa10.89□□□□□ -0.67
COL7A1-204ENST00000462475 DIRC3C9JPN6 131 aa10.89□□□□□ -0.67
COL7A1-204ENST00000462475 C17orf112F2Z3M2 114 aa10.89□□□□□ -0.67
COL7A1-204ENST00000462475 EIF3GO75821 320 aaKnown RBP eCLIP10.89□□□□□ -0.67
COL7A1-204ENST00000462475 NAGKQ9UJ70 344 aa10.89□□□□□ -0.67
COL7A1-204ENST00000462475 ALG5Q9Y673 324 aa10.89□□□□□ -0.67
COL7A1-204ENST00000462475 FFAR4Q5NUL3 377 aa10.88□□□□□ -0.67
COL7A1-204ENST00000462475 Q5VSD8 79 aa10.88□□□□□ -0.67
COL7A1-204ENST00000462475 FAM159AQ6UWV7 190 aa10.88□□□□□ -0.67
COL7A1-204ENST00000462475 ATP5SQ99766 215 aa10.88□□□□□ -0.67
COL7A1-204ENST00000462475 SPXQ9BT56 116 aa10.88□□□□□ -0.67
COL7A1-204ENST00000462475 DMBT1Q9UGM3 2413 aaPredicted RBP10.87□□□□□ -0.67
COL7A1-204ENST00000462475 TRAV4A0A0B4J268 109 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 LOC100131303A0A0U1RQF7 123 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 ORM1P02763 201 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 INAFM2P0DMQ5 153 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 EVI2AP22794 236 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 KHDC3LQ587J8 217 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 HYLS1Q96M11 299 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 LENEPQ9Y5L5 61 aa10.87□□□□□ -0.67
COL7A1-204ENST00000462475 C9JCJ5 164 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 K7EP13 123 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 IFNA5P01569 189 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 CRYGDP07320 174 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 H2BFSP57053 126 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 TDRG1Q3Y452 100 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 AKAP14Q86UN6 197 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 PPP1R1CQ8WVI7 109 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms