RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 UBE2AP49459 152 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 Q5BKY6 102 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 EREGO14944 169 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 LTAP01374 205 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 SLURP2P0DP57 97 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 PSG7Q13046 419 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 ZNF784Q8NCA9 323 aaPredicted RBP4.22□□□□□ -1.73
CSMD3-204ENST00000455883 H0YJW9 148 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 RPL39P5Q59GN2 51 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 TOMM7Q9P0U1 55 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 IGHV1-69P01742 117 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 TMEM158Q8WZ71 300 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 NDUFA4L2Q9NRX3 87 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 PLA2G3Q9NZ20 509 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 POLR3KQ9Y2Y1 108 aaPredicted RBP4.22□□□□□ -1.73
CSMD3-204ENST00000455883 ODF3Q96PU9 254 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 TRBV19A0A075B6N1 114 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 CFC1BP0CG36 223 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 CFC1P0CG37 223 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 MST1P26927 711 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 C1orf43Q9BWL3 253 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 A0A087X0K7 114 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 ZNF134P52741 427 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 Q6ZWC4 215 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 RFLNBQ8N5W9 214 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 ITPR3Q14573 2671 aa4.22□□□□□ -1.73
CSMD3-204ENST00000455883 PYYP10082 97 aa4.21□□□□□ -1.73
CSMD3-204ENST00000455883 BSPH1Q075Z2 132 aa4.21□□□□□ -1.73
CSMD3-204ENST00000455883 PAQR4Q8N4S7 273 aaPredicted RBP4.21□□□□□ -1.73
CSMD3-204ENST00000455883 M0QXV9 152 aa4.21□□□□□ -1.73
CSMD3-204ENST00000455883 PIK3CD-AS1Q5SR53 167 aa4.21□□□□□ -1.73
CSMD3-204ENST00000455883 V9GYV3 84 aa4.21□□□□□ -1.73
CSMD3-204ENST00000455883 FAM110DQ8TAY7 271 aaPredicted RBP4.21□□□□□ -1.74
CSMD3-204ENST00000455883 CLUHP3Q96NS8 147 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 C15orf62A8K5M9 175 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 PMS2P5A8MQ11 134 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 ZNF561-AS1K7EIQ3 104 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 PLPPR2Q96GM1 343 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 NDUFA12Q9UI09 145 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 LYZL1Q6UWQ5 148 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 CD59P13987 128 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 IL9P15248 144 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 COLCA1Q6ZS62 124 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 MAFAQ8NHW3 353 aaPredicted RBP4.21□□□□□ -1.74
CSMD3-204ENST00000455883 A6NNC1 897 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 CD55P08174 381 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 EFNA4P52798 201 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 IGKV1-9A0A0C4DH69 117 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 HRKO00198 91 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 RCHY1Q96PM5 261 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 TRBV10-1A0A0K0K1A3 114 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 TIMM17BO60830 172 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 Q6P435 159 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 TMEM92Q6UXU6 159 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 AMELYQ99218 206 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 SRXN1Q9BYN0 137 aa4.21□□□□□ -1.74
CSMD3-204ENST00000455883 IGHV1-3A0A0C4DH29 117 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 VMO1Q7Z5L0 202 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 PRR25Q96S07 402 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 BPESC1Q9GZL8 116 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 TSSC4Q9Y5U2 329 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-204ENST00000455883 CTRLP40313 264 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 ZNF833PQ6ZTB9 187 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 ST6GALNAC6Q969X2 333 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 RNASE2P10153 161 aaKnown RBP4.2□□□□□ -1.74
CSMD3-204ENST00000455883 A0A1B0GW54 56 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 BUB1B-PAK6H3BSN5 160 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 C14orf177Q52M58 125 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 SUMO4Q6EEV6 95 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 CFHR4Q92496 578 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 PRR13Q9NZ81 148 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 MBD3L4A6NDZ8 208 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-204ENST00000455883 MBD3L3A6NE82 208 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-204ENST00000455883 MBD3L5A6NJ08 208 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-204ENST00000455883 UBE2E1P51965 193 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 SLC22A18ASQ8N1D0 253 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 DAND5Q8N907 189 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 MBD3L2Q8NHZ7 208 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-204ENST00000455883 RNF183Q96D59 192 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 PPIFP30405 207 aaKnown RBP4.2□□□□□ -1.74
CSMD3-204ENST00000455883 TEX36Q5VZQ5 186 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 IGKV1-5P01602 117 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 TCF15Q12870 199 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 TP73-AS1Q9UF72 201 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 THSD7BQ9C0I4 1608 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 SHISA3A0PJX4 238 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 SH2D1AO60880 128 aa4.2□□□□□ -1.74
CSMD3-204ENST00000455883 TRAV12-3A0A0B4J271 114 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 ZNF876PQ49A33 203 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 TRAV25A0A0B4J276 109 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 PATE4P0C8F1 98 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 P0DMU3 169 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 FAM231AP0DMU4 169 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 FAM231CP0DMU5 169 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 TRAV8-3A0A0A6YYJ7 113 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 FAM222AQ5U5X8 452 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 TMEM178BH3BS89 294 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 AGFG2O95081 481 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 IGHV3OR15-7A0A075B7D8 119 aa4.19□□□□□ -1.74
CSMD3-204ENST00000455883 SEC61GP60059 68 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms