RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SMKR1H3BMG3 65 aa10.48□□□□□ -0.73
COL6A3-207ENST00000433762 IGHV7-4-1A0A0J9YVY3 117 aa10.48□□□□□ -0.73
COL6A3-207ENST00000433762 EVI2AP22794 236 aa10.48□□□□□ -0.73
COL6A3-207ENST00000433762 ADAMTSL5Q6ZMM2 481 aa10.48□□□□□ -0.73
COL6A3-207ENST00000433762 GLMPQ8WWB7 406 aa10.48□□□□□ -0.73
COL6A3-207ENST00000433762 MRAP2Q96G30 205 aa10.48□□□□□ -0.73
COL6A3-207ENST00000433762 MSRB1Q9NZV6 116 aa10.48□□□□□ -0.73
COL6A3-207ENST00000433762 TRAV41A0A0B4J266 112 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 TRBV7-9A0A0J9YWB2 115 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 C7orf71A4D174 169 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 LEPP41159 167 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 CDKN1BP46527 198 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 ODF1Q14990 250 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 RNF182Q8N6D2 247 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 ITLN2Q8WWU7 325 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-207ENST00000433762 LINC00477Q96M19 166 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 UBTD1Q9HAC8 227 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 K7EMI3 77 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 MED14OSP0DP75 135 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 OR2K2Q8NGT1 345 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 BPESC1Q9GZL8 116 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 MEGF9Q9H1U4 602 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 COL6A6A6NMZ7 2263 aa10.47□□□□□ -0.73
COL6A3-207ENST00000433762 G3V318 75 aa10.46□□□□□ -0.73
COL6A3-207ENST00000433762 NDUFA4O00483 81 aa10.46□□□□□ -0.73
COL6A3-207ENST00000433762 RBX1P62877 108 aa10.46□□□□□ -0.73
COL6A3-207ENST00000433762 IGHV3-35A0A0C4DH35 117 aa10.46□□□□□ -0.74
COL6A3-207ENST00000433762 C9orf118A6NHY6 69 aa10.46□□□□□ -0.74
COL6A3-207ENST00000433762 CBY3A6NI87 242 aa10.46□□□□□ -0.74
COL6A3-207ENST00000433762 OVOL1O14753 267 aa10.46□□□□□ -0.74
COL6A3-207ENST00000433762 IGF1P05019 195 aa10.46□□□□□ -0.74
COL6A3-207ENST00000433762 PRB4P10163 310 aaPredicted RBP10.46□□□□□ -0.74
COL6A3-207ENST00000433762 RNASE8Q8TDE3 154 aaKnown RBP10.46□□□□□ -0.74
COL6A3-207ENST00000433762 C11orf21Q9P2W6 132 aa10.46□□□□□ -0.74
COL6A3-207ENST00000433762 CACNA1BQ00975 2339 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 NRACQ8N912 160 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 USMG5Q96IX5 58 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 USP24Q9UPU5 2620 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 IGHV3OR16-8A0A075B7F1 116 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 AMMECR1LQ6DCA0 310 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 GTF2H5Q6ZYL4 71 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 HHLA3Q9XRX5 114 aa10.45□□□□□ -0.74
COL6A3-207ENST00000433762 WNK2Q9Y3S1 2297 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 HRNRQ86YZ3 2850 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-207ENST00000433762 IGHV1-69DA0A0B4J2H0 117 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 DPM2O94777 84 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 IGHV1-69P01742 117 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 IGKCP01834 107 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 LAGE3Q14657 143 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 C16orf92Q96LL3 132 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 SLC25A16P16260 332 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 SRSF1Q07955 248 aaKnown RBP eCLIP10.44□□□□□ -0.74
COL6A3-207ENST00000433762 APRG1Q8IVJ8 170 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 TMEM158Q8WZ71 300 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 DKK2Q9UBU2 259 aa10.44□□□□□ -0.74
COL6A3-207ENST00000433762 TRAV8-6A0A0B4J262 113 aa10.43□□□□□ -0.74
COL6A3-207ENST00000433762 LINC01548A6NM66 108 aa10.43□□□□□ -0.74
COL6A3-207ENST00000433762 ARL3P36405 182 aa10.43□□□□□ -0.74
COL6A3-207ENST00000433762 AP1S3Q96PC3 154 aa10.43□□□□□ -0.74
COL6A3-207ENST00000433762 UFSP1Q6NVU6 142 aa10.43□□□□□ -0.74
COL6A3-207ENST00000433762 ZNF580Q9UK33 172 aa10.43□□□□□ -0.74
COL6A3-207ENST00000433762 NBASA2RRP1 2371 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 TRAV12-1A0A0B4J245 112 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 TRAV21A0A0B4J279 112 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 M0R381 172 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 NDUFS8O00217 210 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 SOCS3O14543 225 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 TRGV3P03979 118 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 SMIM17P0DL12 118 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 SAMD13Q5VXD3 122 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 MYOZ3Q8TDC0 251 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 C20orf78Q9BR46 151 aa10.42□□□□□ -0.74
COL6A3-207ENST00000433762 PPP1R17O96001 155 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 PRSS1P07477 247 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 SPANXN1Q5VSR9 72 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 OR10J6PQ8NGY7 276 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 FAM19A4Q96LR4 140 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 CST9LQ9H4G1 147 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 IGHV3-66A0A0C4DH42 116 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 GAS8-AS1O95177 125 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 IGHG2P01859 326 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 NMUP48645 174 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 FXYD7P58549 80 aa10.41□□□□□ -0.74
COL6A3-207ENST00000433762 PLNP26678 52 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 FOXE3Q13461 319 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 TAL2Q16559 108 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 ORMDL2Q53FV1 153 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 PCP2Q8IVA1 136 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 ZFAND2AQ8N6M9 145 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 PIMREGQ9BSJ6 248 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 DCHS2Q6V1P9 2916 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 A0A087WX48 190 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 GAGE10A6NGK3 116 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 LINC01549A6NIU2 74 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 PPIFP30405 207 aaKnown RBP10.4□□□□□ -0.74
COL6A3-207ENST00000433762 OR5A1Q8NGJ0 315 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 C18orf15Q96N68 181 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 FOXC2Q99958 501 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 SMIM2Q9BVW6 85 aa10.4□□□□□ -0.74
COL6A3-207ENST00000433762 LINC01619G3V211 115 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms