RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KCNIP2Q9NS61 270 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 ZNF492Q9P255 531 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 PRO0255Q9UI72 69 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 NAGKQ9UJ70 344 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 RPH3ALQ9UNE2 315 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 PRAF2O60831 178 aa9.93□□□□□ -0.82
SDC1-204ENST00000429035 SFTA3P0C7M3 94 aa9.93□□□□□ -0.82
SDC1-204ENST00000429035 CRYBA4P53673 196 aa9.93□□□□□ -0.82
SDC1-204ENST00000429035 UBE2L3P68036 154 aaKnown RBP9.93□□□□□ -0.82
SDC1-204ENST00000429035 ENKURQ8TC29 256 aa9.93□□□□□ -0.82
SDC1-204ENST00000429035 OR5AC2Q9NZP5 309 aa9.93□□□□□ -0.82
SDC1-204ENST00000429035 TNFRSF18Q9Y5U5 241 aa9.93□□□□□ -0.82
SDC1-204ENST00000429035 C17orf112F2Z3M2 114 aa9.92□□□□□ -0.82
SDC1-204ENST00000429035 NMBP08949 121 aa9.92□□□□□ -0.82
SDC1-204ENST00000429035 DNAH10OSP0CZ25 163 aa9.92□□□□□ -0.82
SDC1-204ENST00000429035 SRIP30626 198 aa9.92□□□□□ -0.82
SDC1-204ENST00000429035 SLAQ13239 276 aa9.92□□□□□ -0.82
SDC1-204ENST00000429035 MRPL23Q16540 153 aaKnown RBP9.92□□□□□ -0.82
SDC1-204ENST00000429035 Q6ZRN7 208 aaPredicted RBP9.92□□□□□ -0.82
SDC1-204ENST00000429035 FXYD5Q96DB9 178 aa9.92□□□□□ -0.82
SDC1-204ENST00000429035 WDR61Q9GZS3 305 aaKnown RBP9.92□□□□□ -0.82
SDC1-204ENST00000429035 HHLA3Q9XRX5 114 aa9.92□□□□□ -0.82
SDC1-204ENST00000429035 RANP62826 216 aaKnown RBP9.91□□□□□ -0.82
SDC1-204ENST00000429035 FHL2Q14192 279 aa9.91□□□□□ -0.82
SDC1-204ENST00000429035 TMEM183BQ1AE95 376 aa9.91□□□□□ -0.82
SDC1-204ENST00000429035 NEGR1Q7Z3B1 354 aa9.91□□□□□ -0.82
SDC1-204ENST00000429035 TMEM183AQ8IXX5 376 aa9.91□□□□□ -0.82
SDC1-204ENST00000429035 LY96Q9Y6Y9 160 aa9.91□□□□□ -0.82
SDC1-204ENST00000429035 EPM2AB3EWF7 344 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 EIF3GO75821 320 aaKnown RBP eCLIP9.9□□□□□ -0.82
SDC1-204ENST00000429035 GYPEP15421 78 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 FFAR4Q5NUL3 377 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 LYPD5Q6UWN5 251 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 NFE4Q86UQ8 179 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 WFDC10BQ8IUB3 73 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 ZNF479Q96JC4 524 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 HYLS1Q96M11 299 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 MDFICQ9P1T7 246 aa9.9□□□□□ -0.82
SDC1-204ENST00000429035 TRGV11A0A075B6L2 103 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 TRAV9-2A0A087WT02 112 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 K7EQD1 137 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 ZNF266Q14584 549 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 KHDC3LQ587J8 217 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 FAM159AQ6UWV7 190 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 SMIM3Q9BZL3 60 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 NMES1Q9C002 83 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 NDUFA13Q9P0J0 144 aa9.89□□□□□ -0.83
SDC1-204ENST00000429035 H0YIZ8 118 aa9.88□□□□□ -0.83
SDC1-204ENST00000429035 ASAH1Q13510 395 aa9.88□□□□□ -0.83
SDC1-204ENST00000429035 ATP5SQ99766 215 aa9.88□□□□□ -0.83
SDC1-204ENST00000429035 PGPEP1Q9NXJ5 209 aa9.88□□□□□ -0.83
SDC1-204ENST00000429035 TRBV7-9A0A0J9YWB2 115 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 RBAKDNA6NC62 111 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 F6UZH7 168 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 IFNA5P01569 189 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 EVI2AP22794 236 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 TAS2R45P59539 299 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 CDPF1Q6NVV7 123 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 OR10G4Q8NGN3 311 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 CMTM2Q8TAZ6 248 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 SCGB1C1Q8TD33 95 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 MSRB1Q9NZV6 116 aa9.87□□□□□ -0.83
SDC1-204ENST00000429035 A0A087WTM6 91 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 C9JCJ5 164 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 DIRC3C9JPN6 131 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 Q6AWC8 147 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 LYPD1Q8N2G4 141 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 NHLRC2Q8NBF2 726 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 S100ZQ8WXG8 99 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 TXNDC17Q9BRA2 123 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 SPXQ9BT56 116 aa9.86□□□□□ -0.83
SDC1-204ENST00000429035 TRAV4A0A0B4J268 109 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 LOC100131303A0A0U1RQF7 123 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 ORM1P02763 201 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 PPT1P50897 306 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 CYCSP99999 105 aaKnown RBP9.85□□□□□ -0.83
SDC1-204ENST00000429035 GOLT1AQ6ZVE7 132 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 OR4C5Q8NGB2 326 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 PPP1R1CQ8WVI7 109 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 HSPB11Q9Y547 144 aa9.85□□□□□ -0.83
SDC1-204ENST00000429035 IGHV3-16A0A0C4DH30 117 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 PGPA6NDG6 321 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 INMT-MINDY4F8WBC2 141 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 SSNA1O43805 119 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 CRYGDP07320 174 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 PET100P0DJ07 73 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 FAM74A1Q5RGS3 127 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 FRZBQ92765 325 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 OTORQ9NRC9 128 aa9.84□□□□□ -0.83
SDC1-204ENST00000429035 M0R2P5 195 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 PSCAO43653 123 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 UPK1BO75841 260 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 INAFM2P0DMQ5 153 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 H2BFSP57053 126 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 KRTAP10-1P60331 282 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 GNG5P63218 68 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 HAMPP81172 84 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 Q5VSD8 79 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 RASL10AQ92737 203 aa9.83□□□□□ -0.84
SDC1-204ENST00000429035 SDF2L1Q9HCN8 221 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms