RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 MEF2BQ02080 365 aaPredicted RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC25A11Q02978 314 aaKnown RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 IL24Q13007 206 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 JOSD1Q15040 202 aaPredicted RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 PHLDA2Q53GA4 152 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TNFAIP8L3Q5GJ75 292 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 SPANXN5Q5MJ07 72 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM236Q5W0B7 351 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 TOMM20LQ6UXN7 152 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 BAP18Q8IXM2 172 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 MRPL30Q8TCC3 161 aaKnown RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 PLAC8Q9NZF1 115 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 LOC285556D6RIA3 1793 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 RGPD2P0DJD1 1756 aa1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 NYNRINQ9P2P1 1898 aaKnown RBP1.93□□□□□ -2.1
CCDC88A-205ENST00000426576 OTOFQ9HC10 1997 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 IGLV3-32A0A0A0MS00 114 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TRAV13-1A0A0B4J241 112 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TRAV34A0A0B4J273 112 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 C7orf77A4D0Y5 90 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 AQP12BA6NM10 295 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 A8MWV9 139 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 NDUFS6O75380 124 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 PSMB3P49720 205 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 GGTA1PQ4G0N0 100 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 CCDC58Q4VC31 144 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 RPL39P5Q59GN2 51 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 PRR27Q6MZM9 219 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 HRCT1Q6UXD1 115 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 AQP12AQ8IXF9 295 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 OR52B2Q96RD2 323 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 NKX6-2Q9C056 277 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 NPVFQ9HCQ7 196 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 IGKV1D-8A0A087WSZ0 117 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM90A5PA8MXJ8 464 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM90A23PA8MXZ1 464 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 CTDSP2O14595 271 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 PHOX2AO14813 284 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 CTDSPLO15194 276 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 NDUFB1O75438 58 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM90A15PP0C7V4 464 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM90A13PP0C7W8 464 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM90A24PP0C7X0 464 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 SRPXP78539 464 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TIMM50Q3ZCQ8 353 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TEX36Q5VZQ5 186 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 CST9LP1Q5W188 147 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 FAM71F2Q6NXP2 309 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 DPPA3Q6W0C5 159 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC25A48Q6ZT89 311 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 C6orf201Q7Z4U5 140 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF439Q8NDP4 499 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 NUP35Q8NFH5 326 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 OR10D4PQ8NGN7 298 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 AP1S3Q96PC3 154 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 IGHV1OR15-1A0A075B7D0 117 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TRAV24A0A0B4J272 114 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 IGHV1-24A0A0C4DH33 117 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 C17orf98A8MV24 154 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TCAPO15273 167 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM127O75204 238 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 CST7O76096 145 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 MT-ATP8P03928 68 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 SNRPCP09234 159 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC00869P0C866 280 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 DUTP33316 252 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 CAMPP49913 170 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 AQP4P55087 323 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 C5orf47Q569G3 176 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 C10orf113Q5VZT2 155 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 GAGE2AQ6NT46 116 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 TBPL2Q6SJ96 375 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 RBM45Q8IUH3 476 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC00311Q8N616 119 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 NKAIN3Q8N8D7 197 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 NPBQ8NG41 125 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 OR8J2Q8NGG1 315 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 PRELID1Q9Y255 219 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 R4GMQ9 66 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 PTPRSQ13332 1948 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 MEGF8Q7Z7M0 2845 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 GPR98Q8WXG9 6306 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF503-AS2A6NEH8 195 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 PSMA1P25786 263 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 FOXA1P55317 472 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 LELP1Q5T871 98 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 C22orf34Q6ZV56 151 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 RETNLBQ9BQ08 111 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 BCL7BQ9BQE9 202 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 ACTR3CQ9C0K3 210 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 C19orf73Q9NVV2 129 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 GAB2Q9UQC2 676 aa1.92□□□□□ -2.1
CCDC88A-205ENST00000426576 IGKV1-8A0A0C4DH67 115 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 C19orf71A6NCJ1 209 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 IZUMO1RA6ND01 250 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 K7EMT4 169 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 PEX7O00628 323 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 CST4P01036 141 aa1.91□□□□□ -2.1
CCDC88A-205ENST00000426576 CFC1P0CG37 223 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms