RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LYZL1Q6UWQ5 148 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 Q6ZS46 218 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 MAP1LC3AQ9H492 121 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 CFAP54Q96N23 3096 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 LINC01549A6NIU2 74 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 LY6G6DO95868 133 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 ZNF688P0C7X2 276 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 HSBP1L1C9JCN9 74 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 ZNF705DP0CH99 300 aaPredicted RBP6.38□□□□□ -1.39
USP54-203ENST00000418501 ZNF705BP0CI00 300 aaPredicted RBP6.38□□□□□ -1.39
USP54-203ENST00000418501 GAGE1Q13065 139 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 IGFL4Q6B9Z1 124 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 PRO1933Q9H354 126 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 MUC3AQ02505 3323 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 EPG5Q9HCE0 2579 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 C7orf71A4D174 169 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 PDZD11Q5EBL8 140 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 AP1S3Q96PC3 154 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 C20orf144Q9BQM9 153 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 PLXNB1O43157 2135 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 K7EQG2 157 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 CTRLP40313 264 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 C1QTNF4Q9BXJ3 329 aa6.38□□□□□ -1.39
USP54-203ENST00000418501 TRAV8-2A0A0B4J237 113 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 OR11H12B2RN74 326 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 M0R2Z0 102 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 CDKN1BP46527 198 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 STHQ8IWL8 128 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 ZNF664Q8N3J9 261 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 TMEM208Q9BTX3 173 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 TMEM191AQ9H0A3 160 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 IGSF10Q6WRI0 2623 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 LOC102724200A0A096LPH7 203 aaPredicted RBP6.37□□□□□ -1.39
USP54-203ENST00000418501 A0A1W2PRX2 142 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 PRELID3AQ96N28 172 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 SIGLEC8Q9NYZ4 499 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 TIMM8BQ9Y5J9 83 aaPredicted RBP6.37□□□□□ -1.39
USP54-203ENST00000418501 NTF3P20783 257 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 INSL3P51460 131 aa6.37□□□□□ -1.39
USP54-203ENST00000418501 SAP30O75446 220 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 HLA-DMBP28068 263 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 SLURP1P55000 103 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 SNHG12Q9BXW3 62 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 NXT2Q9NPJ8 142 aaKnown RBP6.36□□□□□ -1.39
USP54-203ENST00000418501 LRRK2Q5S007 2527 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 A0A1B0GXF2 115 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 H7C1H1 209 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 JOSD1Q15040 202 aaPredicted RBP6.36□□□□□ -1.39
USP54-203ENST00000418501 LINC01006Q8NI28 216 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 J3KRW8 73 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 INSP01308 110 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 GZMBP10144 247 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 MRAP2Q96G30 205 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 GRIFINA4D1Z8 144 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 FAM104BQ5XKR9 115 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 ZNF493Q6ZR52 646 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 OR10AG1Q8NH19 301 aa6.36□□□□□ -1.39
USP54-203ENST00000418501 ZFYVE26Q68DK2 2539 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 ABCA1O95477 2261 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 A0A0J9YX75 114 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 DEFB131AP59861 70 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 NSUN5P1Q3KNT7 163 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 HIST1H2BLQ99880 126 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 MAP1LC3CQ9BXW4 147 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 AP5S1Q9NUS5 200 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 PRAC2D3DTV9 90 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 SOCS3O14543 225 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 ARMS2P0C7Q2 107 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 LINC00614P0C842 121 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 PMCHL1Q16048 86 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 KIAA1644Q3SXP7 199 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 TMEM256Q8N2U0 113 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 GATD1Q8NB37 220 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 DPH3P1Q9H4G8 78 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 DLEU1O43261 78 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 GOLT1BQ9Y3E0 138 aa6.35□□□□□ -1.39
USP54-203ENST00000418501 ZNF324O75467 553 aaPredicted RBP6.34□□□□□ -1.39
USP54-203ENST00000418501 SERF1AO75920 110 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 CD7P09564 240 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 ALKBH7Q9BT30 221 aaPredicted RBP6.34□□□□□ -1.39
USP54-203ENST00000418501 IGHV1OR15-1A0A075B7D0 117 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 ESDP10768 282 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 ZNF415Q09FC8 603 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 GTSCR1Q86UQ5 136 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 GTSF1Q8WW33 167 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 USP9XQ93008 2570 aaPredicted RBP6.34□□□□□ -1.39
USP54-203ENST00000418501 DCANP1Q8TF63 244 aa6.34□□□□□ -1.39
USP54-203ENST00000418501 DLX4Q92988 240 aaPredicted RBP6.34□□□□□ -1.39
USP54-203ENST00000418501 CITED2Q99967 270 aaPredicted RBP6.34□□□□□ -1.39
USP54-203ENST00000418501 CBY3A6NI87 242 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 NPSP0C0P6 89 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 IGLC6P0CF74 106 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 KRTDAPP60985 99 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 SMAGPQ0VAQ4 97 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 DEFB114Q30KQ6 69 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 DUX3Q96PT4 197 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 DOPEY2Q9Y3R5 2298 aa6.34□□□□□ -1.4
USP54-203ENST00000418501 DSPP15924 2871 aaKnown RBP6.34□□□□□ -1.4
USP54-203ENST00000418501 F5H697 171 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 CRLF1O75462 422 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms