RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 IGKV2D-24A0A075B6R9 120 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 IGKV1-9A0A0C4DH69 117 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 H3BMG7 143 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 LTAP01374 205 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 CRYGSP22914 178 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 DAZ2Q13117 558 aaKnown RBP6.34□□□□□ -1.39
SYNE1-210ENST00000409694 DAZ4Q86SG3 579 aaKnown RBP6.34□□□□□ -1.39
SYNE1-210ENST00000409694 DAZ3Q9NR90 486 aaKnown RBP6.34□□□□□ -1.39
SYNE1-210ENST00000409694 H3BUA1 57 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 NTF4P34130 210 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 SPINK13Q1W4C9 94 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 SS18L2Q9UHA2 77 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 BUB3O43684 328 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 ABCA4P78363 2273 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 CFC1BP0CG36 223 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 CFC1P0CG37 223 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 ZFP36L1Q07352 338 aaKnown RBP6.34□□□□□ -1.39
SYNE1-210ENST00000409694 CYTL1Q9NRR1 136 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 ZNF362Q5T0B9 420 aaPredicted RBP6.34□□□□□ -1.4
SYNE1-210ENST00000409694 KIR2DL5BQ8NHK3 375 aa6.34□□□□□ -1.4
SYNE1-210ENST00000409694 NLRC5Q86WI3 1866 aa6.34□□□□□ -1.4
SYNE1-210ENST00000409694 OVOL3O00110 214 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 CSRP1P21291 193 aaKnown RBP6.33□□□□□ -1.4
SYNE1-210ENST00000409694 GATA4P43694 442 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 FOXI2Q6ZQN5 318 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 IGF2BP2-AS1Q96M15 143 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 XCL2Q9UBD3 114 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 ICOSQ9Y6W8 199 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 EML5Q05BV3 1969 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 CASC2Q6XLA1 102 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 DYNAPQ8N1N2 210 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 TRBV19A0A075B6N1 114 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 Q6ZWC4 215 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 BRWD3Q6RI45 1802 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 C15orf62A8K5M9 175 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 ETV2O00321 342 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-210ENST00000409694 ZFP2Q6ZN57 461 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 CFHR3Q02985 330 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 DENND4CQ5VZ89 1909 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 PLXNA4Q9HCM2 1894 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 TMEM256-PLSCR3K7ERE1 68 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 FOXF2Q12947 444 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 C12orf74Q32Q52 190 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 CD177Q8N6Q3 437 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 TET1Q8NFU7 2136 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 C1QCP02747 245 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 UBE2AP49459 152 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 KLK9Q9UKQ9 250 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 LINC00527Q9UJ94 153 aa6.33□□□□□ -1.4
SYNE1-210ENST00000409694 B5MCH6 92 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 IGLL5B9A064 214 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 PRSS57Q6UWY2 283 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 SIGLEC8Q9NYZ4 499 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 LAIR2Q6ISS4 152 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV3-16A0A0C4DH30 117 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 FAM236AA0A1B0GUQ0 79 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 FAM236BA0A1B0GV22 79 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 PAQR4Q8N4S7 273 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-210ENST00000409694 XCL1P47992 114 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 DEFB104AQ8WTQ1 72 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 NUP210Q8TEM1 1887 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-210ENST00000409694 KIAA1671Q9BY89 1806 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 SHISA3A0PJX4 238 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 H3BRN7 92 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 Q71RC1 249 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-210ENST00000409694 C16orf74Q96GX8 76 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 REG4Q9BYZ8 158 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 EP300Q09472 2414 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-210ENST00000409694 WDR90Q96KV7 1748 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 SPACA3Q8IXA5 215 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 COX7B2Q8TF08 81 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 TM2D2Q9BX73 214 aa6.32□□□□□ -1.4
SYNE1-210ENST00000409694 MRPL35Q9NZE8 188 aaKnown RBP6.32□□□□□ -1.4
SYNE1-210ENST00000409694 TMEM213A2RRL7 107 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 MSMBP08118 114 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 ZNF837Q96EG3 531 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-210ENST00000409694 Q9H8V8 135 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 LENEPQ9Y5L5 61 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 EFNA2O43921 213 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV1-69DA0A0B4J2H0 117 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 K7ERJ3 54 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 C10orf55Q5SWW7 151 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 C11orf52Q96A22 123 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 COL6A6A6NMZ7 2263 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 ZNF833PQ6ZTB9 187 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 ATP6V0E2Q8NHE4 81 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 NDUFA4L2Q9NRX3 87 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 TRAV3A0A0B4J244 114 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 TRBV12-3P01733 135 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 PRR25Q96S07 402 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 WIPF2Q8TF74 440 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-210ENST00000409694 B9D2Q9BPU9 175 aa6.31□□□□□ -1.4
SYNE1-210ENST00000409694 COX7A2LO14548 114 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 IGKV1-39P01597 117 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 IGKV1D-39P04432 117 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 FGFBP3Q8TAT2 258 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 COLQQ9Y215 455 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-210ENST00000409694 LINC00473A8K010 186 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 Q6P435 159 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 BRD3OSQ6XYD6 125 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms