RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CENPVL3A0A0U1RRI6 287 aa14.49□□□□□ -0.09
USP48-204ENST00000400301 WI2-2373I1.2A0A1W2PRP0 233 aa14.49□□□□□ -0.09
USP48-204ENST00000400301 BCL6BQ8N143 479 aaPredicted RBP14.49□□□□□ -0.09
USP48-204ENST00000400301 MBD6Q96DN6 1003 aa14.49□□□□□ -0.09
USP48-204ENST00000400301 PRSS2P07478 247 aa14.48□□□□□ -0.09
USP48-204ENST00000400301 JMJD8Q96S16 334 aa14.48□□□□□ -0.09
USP48-204ENST00000400301 DAZ1Q9NQZ3 744 aaKnown RBP14.48□□□□□ -0.09
USP48-204ENST00000400301 TRAV12-3A0A0B4J271 114 aa14.48□□□□□ -0.09
USP48-204ENST00000400301 MSMBP08118 114 aa14.48□□□□□ -0.09
USP48-204ENST00000400301 SMAD7O15105 426 aaKnown RBP14.48□□□□□ -0.09
USP48-204ENST00000400301 MLST8Q9BVC4 326 aa14.48□□□□□ -0.09
USP48-204ENST00000400301 CD5LO43866 347 aa14.47□□□□□ -0.09
USP48-204ENST00000400301 PSMB11A5LHX3 300 aa14.47□□□□□ -0.09
USP48-204ENST00000400301 CRYGBP07316 175 aa14.47□□□□□ -0.09
USP48-204ENST00000400301 LCNL1Q6ZST4 164 aa14.47□□□□□ -0.09
USP48-204ENST00000400301 Q6ZVH6 145 aa14.47□□□□□ -0.09
USP48-204ENST00000400301 DTX2Q86UW9 622 aa14.47□□□□□ -0.09
USP48-204ENST00000400301 A0A1B0GXF2 115 aa14.46□□□□□ -0.09
USP48-204ENST00000400301 TRAV26-2A0A0B4J265 109 aa14.46□□□□□ -0.09
USP48-204ENST00000400301 DUX3Q96PT4 197 aa14.46□□□□□ -0.09
USP48-204ENST00000400301 H7C1H1 209 aa14.46□□□□□ -0.1
USP48-204ENST00000400301 COX8AP10176 69 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 LGALS9BQ3B8N2 356 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 PAPPA-AS1Q5QFB9 102 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 LGALS9CQ6DKI2 356 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 LY6G5BQ8NDX9 201 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 MSRB1Q9NZV6 116 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 SPTBN4Q9H254 2564 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 MRPL16Q9NX20 251 aaKnown RBP14.45□□□□□ -0.1
USP48-204ENST00000400301 PTPN13Q12923 2485 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 NDUFS8O00217 210 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 TNFRSF18Q9Y5U5 241 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 DUSP14O95147 198 aaKnown RBP14.45□□□□□ -0.1
USP48-204ENST00000400301 APOMO95445 188 aa14.45□□□□□ -0.1
USP48-204ENST00000400301 CD300EQ496F6 205 aaPredicted RBP14.45□□□□□ -0.1
USP48-204ENST00000400301 CHD8Q9HCK8 2581 aa14.44□□□□□ -0.1
USP48-204ENST00000400301 ITLN2Q8WWU7 325 aaPredicted RBP14.44□□□□□ -0.1
USP48-204ENST00000400301 BUB3O43684 328 aa14.44□□□□□ -0.1
USP48-204ENST00000400301 DSCR9P59020 149 aa14.44□□□□□ -0.1
USP48-204ENST00000400301 KIR3DS1Q14943 382 aa14.44□□□□□ -0.1
USP48-204ENST00000400301 Q8N8P6 123 aa14.44□□□□□ -0.1
USP48-204ENST00000400301 NOTCH2Q04721 2471 aa14.43□□□□□ -0.1
USP48-204ENST00000400301 NDUFA4O00483 81 aa14.43□□□□□ -0.1
USP48-204ENST00000400301 CSTL1Q9H114 145 aa14.43□□□□□ -0.1
USP48-204ENST00000400301 PRAC2D3DTV9 90 aa14.43□□□□□ -0.1
USP48-204ENST00000400301 CFHR4Q92496 578 aa14.43□□□□□ -0.1
USP48-204ENST00000400301 ZNF815PA8K554 130 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 FOXE3Q13461 319 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 ARL6IP6Q8N6S5 226 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 TMEM8BA6NDV4 472 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 XIRP2A4UGR9 3374 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 GATA1P15976 413 aaPredicted RBP14.42□□□□□ -0.1
USP48-204ENST00000400301 MYCNOSP40205 109 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 MAPK1IP1LQ8NDC0 245 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 SZT2Q5T011 3432 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 A0A087WWL8 130 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 GAGE1Q13065 139 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 SAMD5Q5TGI4 173 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 SFTA2Q6UW10 78 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 PIP4P2Q8N4L2 257 aa14.42□□□□□ -0.1
USP48-204ENST00000400301 SPOCK3Q9BQ16 436 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 CIDEAO60543 219 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 PLNP26678 52 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 IGHV4-61A0A0C4DH41 118 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 C2orf70A6NJV1 201 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 ANXA2RQ3ZCQ2 193 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 LINC01587Q99440 93 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 DKK2Q9UBU2 259 aa14.41□□□□□ -0.1
USP48-204ENST00000400301 BVES-AS1Q5T3Y7 98 aa14.4□□□□□ -0.1
USP48-204ENST00000400301 PCSK5Q92824 1860 aa14.4□□□□□ -0.1
USP48-204ENST00000400301 SYNJ2BPP57105 145 aa14.4□□□□□ -0.1
USP48-204ENST00000400301 SUMO2P61956 95 aaKnown RBP14.4□□□□□ -0.1
USP48-204ENST00000400301 MRAP2Q96G30 205 aa14.4□□□□□ -0.1
USP48-204ENST00000400301 MYO9AB2RTY4 2548 aa14.4□□□□□ -0.1
USP48-204ENST00000400301 TNRC6BQ9UPQ9 1833 aaKnown RBP14.4□□□□□ -0.1
USP48-204ENST00000400301 TRBV6-1A0A0K0K1D8 114 aa14.4□□□□□ -0.1
USP48-204ENST00000400301 SIRPDQ9H106 197 aa14.4□□□□□ -0.1
USP48-204ENST00000400301 GEMIN7Q9H840 131 aaKnown RBP14.4□□□□□ -0.1
USP48-204ENST00000400301 ODF3BA8MYP8 253 aa14.4□□□□□ -0.11
USP48-204ENST00000400301 LY6LH3BQJ8 138 aa14.4□□□□□ -0.11
USP48-204ENST00000400301 CHAC1Q9BUX1 264 aa14.39□□□□□ -0.11
USP48-204ENST00000400301 F6UB75 175 aa14.39□□□□□ -0.11
USP48-204ENST00000400301 VCX2Q9H322 139 aa14.39□□□□□ -0.11
USP48-204ENST00000400301 IGHV4-39P01824 125 aa14.39□□□□□ -0.11
USP48-204ENST00000400301 ZNF479Q96JC4 524 aa14.39□□□□□ -0.11
USP48-204ENST00000400301 SPRY2O43597 315 aa14.38□□□□□ -0.11
USP48-204ENST00000400301 TNFRSF13BO14836 293 aaPredicted RBP14.38□□□□□ -0.11
USP48-204ENST00000400301 LINC01545Q5VT33 79 aa14.38□□□□□ -0.11
USP48-204ENST00000400301 C11orf44Q8N8P7 122 aa14.38□□□□□ -0.11
USP48-204ENST00000400301 ZNF48Q96MX3 618 aaPredicted RBP14.38□□□□□ -0.11
USP48-204ENST00000400301 PEMTQ9UBM1 199 aa14.38□□□□□ -0.11
USP48-204ENST00000400301 A0A1W2PRX2 142 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 RBAKDNA6NC62 111 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 VCYO14598 125 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 OR5A1Q8NGJ0 315 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 EMP1P54849 157 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 MRPL35Q9NZE8 188 aaKnown RBP14.37□□□□□ -0.11
USP48-204ENST00000400301 RNF114Q9Y508 228 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 SLC25A16P16260 332 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 LINC01356Q8N9X3 169 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms