RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ANKRD12Q6UB98 2062 aa2.68□□□□□ -1.98
HMGB1-204ENST00000399489 SVILO95425 2214 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 RIC1Q4ADV7 1423 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 TRBV20-1A0A075B6N2 111 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 IGKV1-9A0A0C4DH69 117 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 OOSP1A8MZH6 123 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 H3BMM0 161 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 K7EP34 96 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 SLC25A20O43772 301 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 SH2D1AO60880 128 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 IGLV1-47P01700 117 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 RBP4P02753 201 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 ZNF286BP0CG31 522 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 TPT1P13693 172 aaKnown RBP2.67□□□□□ -1.98
HMGB1-204ENST00000399489 RPL27AP46776 148 aaKnown RBP2.67□□□□□ -1.98
HMGB1-204ENST00000399489 LSM3P62310 102 aaKnown RBP2.67□□□□□ -1.98
HMGB1-204ENST00000399489 Q0VG73 95 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 WFDC5Q8TCV5 224 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 UBE2WQ96B02 151 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 UPK3BQ9BT76 320 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 NPCDR1Q9BY65 106 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 TTTY13Q9BZ97 58 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 RPS10P5Q9NQ39 176 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 DNAJC15Q9Y5T4 150 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 LOXHD1Q8IVV2 1947 aa2.67□□□□□ -1.98
HMGB1-204ENST00000399489 XIRP2A4UGR9 3374 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 FAM24AA6NFZ4 105 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 LECT2O14960 151 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 SNCGO76070 127 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 CYB5AP00167 134 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 SOD1P00441 154 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 LHBP01229 141 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 HBDP02042 147 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 IGKV1-16P04430 117 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 SLC25A4P12235 298 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 HLA-DMBP28068 263 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 SNCAP37840 140 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 EBI3Q14213 229 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 SPANXA2-OT1Q8N9U9 137 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 LINC00301Q8NCQ3 95 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 ATP6V0E2Q8NHE4 81 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 SLC35B3Q9H1N7 401 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 XAGE1AQ9HD64 81 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 OR5V1Q9UGF6 321 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 LSM2Q9Y333 95 aaKnown RBP2.66□□□□□ -1.98
HMGB1-204ENST00000399489 U3KQK5 164 aa2.66□□□□□ -1.98
HMGB1-204ENST00000399489 RALGAPA2Q2PPJ7 1873 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 A0A096LNJ9 63 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 TRGV5A0A0B4J1U4 118 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 MUC21A0A0G2JKD1 596 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 PINLYPA6NC86 204 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 C17orf51A8MQB3 221 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 A8MUU9 505 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 F8W1H4 67 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 ZNF861PO60384 105 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 NDUFB6O95139 128 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 NMBP08949 121 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 CCL5P13501 91 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 FXYD7P58549 80 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 KISS1Q15726 138 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 TDRG1Q3Y452 100 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 Q5W150 140 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 ZNF322Q6U7Q0 402 aaPredicted RBP2.65□□□□□ -1.98
HMGB1-204ENST00000399489 ZFP2Q6ZN57 461 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 C7orf65Q6ZTY9 151 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 HIST1H2BLQ99880 126 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 BCL2L10Q9HD36 194 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 OSTCQ9NRP0 149 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 CITO14578 2027 aa2.65□□□□□ -1.98
HMGB1-204ENST00000399489 RBBP6Q7Z6E9 1792 aaKnown RBP2.65□□□□□ -1.99
HMGB1-204ENST00000399489 UBR2Q8IWV8 1755 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 NLRC5Q86WI3 1866 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 FANCMQ8IYD8 2048 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 DOCK8Q8NF50 2099 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 ATG2BQ96BY7 2078 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 TRBV24-1A0A075B6N3 115 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 TRBV6-6A0A0A6YYG2 114 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-204ENST00000399489 IGLC7A0M8Q6 106 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 C7orf66A4D0T2 115 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 C19orf71A6NCJ1 209 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 C19orf84I3L1E1 186 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 OR1I1O60431 355 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 CD3DP04234 171 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 GYPBP06028 91 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 RNASE4P34096 147 aaKnown RBP2.65□□□□□ -1.99
HMGB1-204ENST00000399489 NPC2P61916 151 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 Q6ZR03 302 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 ARPINQ7Z6K5 226 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 TSLPQ969D9 159 aa2.65□□□□□ -1.99
HMGB1-204ENST00000399489 POP5Q969H6 163 aaKnown RBP2.65□□□□□ -1.99
HMGB1-204ENST00000399489 DUOX1Q9NRD9 1551 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 TICRRQ7Z2Z1 1910 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 ZNF318Q5VUA4 2279 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 PIEZO1Q92508 2521 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-204ENST00000399489 PITX3O75364 302 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 SFT2D2O95562 160 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 IGHV1-69P01742 117 aa2.64□□□□□ -1.99
HMGB1-204ENST00000399489 GYPAP02724 150 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms