RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NXT2Q9NPJ8 142 aaKnown RBP9.79□□□□□ -0.84
SHMT1-205ENST00000395684 OOSP1A8MZH6 123 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 K7EP34 96 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 K7ERU9 68 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 PRSS1P07477 247 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 ECSCRQ19T08 205 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 MINOS1Q5TGZ0 78 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 MINOS1-NBL1R4GNA1 71 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 IGLV2-18A0A075B6J9 118 aa9.78□□□□□ -0.84
SHMT1-205ENST00000395684 TRGV3P03979 118 aa9.78□□□□□ -0.84
SHMT1-205ENST00000395684 TMEM158Q8WZ71 300 aa9.78□□□□□ -0.84
SHMT1-205ENST00000395684 ZFHX3Q15911 3703 aa9.78□□□□□ -0.84
SHMT1-205ENST00000395684 Q6ZQT7 251 aa9.78□□□□□ -0.84
SHMT1-205ENST00000395684 OR2K2Q8NGT1 345 aa9.78□□□□□ -0.84
SHMT1-205ENST00000395684 FAM110DQ8TAY7 271 aaPredicted RBP9.78□□□□□ -0.84
SHMT1-205ENST00000395684 ATRXP46100 2492 aa9.77□□□□□ -0.84
SHMT1-205ENST00000395684 IGHV3-49A0A0A0MS15 119 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 RBAKDNA6NC62 111 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 LINC01548A6NM66 108 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 TRAV8-2A0A0B4J237 113 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 ATP6V0E1O15342 81 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 ADORA2A-AS1P86434 159 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 FOXC1Q12948 553 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 CLEC19AQ6UXS0 136 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 AJUBAQ96IF1 538 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 CCDC140Q96MF4 163 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 FOXC2Q99958 501 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 MEGF9Q9H1U4 602 aa9.77□□□□□ -0.85
SHMT1-205ENST00000395684 A0A1W2PPM0 123 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 G3V318 75 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 IGKCP01834 107 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 S100A7P31151 101 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 GTSCR1Q86UQ5 136 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 Q8N8P6 123 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 SIRPDQ9H106 197 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 TRAV26-2A0A0B4J265 109 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 FXYD2P54710 66 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 SLC50A1Q9BRV3 221 aa9.76□□□□□ -0.85
SHMT1-205ENST00000395684 IGHV7-4-1A0A0J9YVY3 117 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 ZNF207O43670 478 aaKnown RBP9.75□□□□□ -0.85
SHMT1-205ENST00000395684 GOSR1O95249 250 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 SMIM17P0DL12 118 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 GCSHP23434 173 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 RAB9AP51151 201 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 TMEM8BA6NDV4 472 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 KLK9Q2XQG4 91 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 ZC2HC1BQ5TFG8 222 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 NRACQ8N912 160 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 KLK9Q9UKQ9 250 aa9.75□□□□□ -0.85
SHMT1-205ENST00000395684 SMIM15Q7Z3B0 74 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 CSTL1Q9H114 145 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 HIGD1BQ9P298 99 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 SPCS1Q9Y6A9 102 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 TRBV25-1A0A075B6N4 114 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 TRAV40A0A0B4J280 105 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 CHAC1Q9BUX1 264 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 COL12A1Q99715 3063 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 ITPR1Q14643 2758 aa9.74□□□□□ -0.85
SHMT1-205ENST00000395684 A0A1W2PPR1 153 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 DPM2O94777 84 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 SMIM13P0DJ93 91 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 TMEM78Q5T7P6 136 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 C8orf86Q6ZUL3 223 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 TMEM160Q9NX00 188 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 MRPL35Q9NZE8 188 aaKnown RBP9.73□□□□□ -0.85
SHMT1-205ENST00000395684 K7ERJ3 54 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 ATP5LO75964 103 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 PSMG4Q5JS54 123 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 SAMD5Q5TGI4 173 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 NEGR1Q7Z3B1 354 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 UFC1Q9Y3C8 167 aa9.73□□□□□ -0.85
SHMT1-205ENST00000395684 SMPXQ9UHP9 88 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 ACACBO00763 2458 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 PRSS47A8MTI9 375 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 G3V4G9 280 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 SAA4P35542 130 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 UBE2E1P51965 193 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 LAGE3Q14657 143 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 MAPKAPK5-AS1Q8N8E1 139 aa9.72□□□□□ -0.85
SHMT1-205ENST00000395684 K7EMI3 77 aa9.71□□□□□ -0.85
SHMT1-205ENST00000395684 FABP2P12104 132 aa9.71□□□□□ -0.85
SHMT1-205ENST00000395684 RIPPLY3P57055 190 aa9.71□□□□□ -0.85
SHMT1-205ENST00000395684 C9orf47Q6ZRZ4 202 aa9.71□□□□□ -0.85
SHMT1-205ENST00000395684 OR5A1Q8NGJ0 315 aa9.71□□□□□ -0.85
SHMT1-205ENST00000395684 PHLDA1Q8WV24 401 aaPredicted RBP9.71□□□□□ -0.85
SHMT1-205ENST00000395684 METTL26Q96S19 204 aa9.71□□□□□ -0.85
SHMT1-205ENST00000395684 CACNA1AO00555 2505 aa9.71□□□□□ -0.85
SHMT1-205ENST00000395684 EFNA4P52798 201 aa9.71□□□□□ -0.86
SHMT1-205ENST00000395684 PRR9Q5T870 116 aa9.71□□□□□ -0.86
SHMT1-205ENST00000395684 MYOZ3Q8TDC0 251 aa9.71□□□□□ -0.86
SHMT1-205ENST00000395684 EEF1AKMT3Q96AZ1 226 aa9.71□□□□□ -0.86
SHMT1-205ENST00000395684 U3KQE9 123 aa9.71□□□□□ -0.86
SHMT1-205ENST00000395684 IGHV4-4A0A075B6R2 117 aa9.7□□□□□ -0.86
SHMT1-205ENST00000395684 IGF1P05019 195 aa9.7□□□□□ -0.86
SHMT1-205ENST00000395684 SPANXN1Q5VSR9 72 aa9.7□□□□□ -0.86
SHMT1-205ENST00000395684 MRPL53Q96EL3 112 aaKnown RBP9.7□□□□□ -0.86
SHMT1-205ENST00000395684 TM2D2Q9BX73 214 aa9.7□□□□□ -0.86
SHMT1-205ENST00000395684 CENPVL3A0A0U1RRI6 287 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 H3BVH4 76 aa9.69□□□□□ -0.86
SHMT1-205ENST00000395684 SPRY2O43597 315 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms