RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 TMEM160Q9NX00 188 aa10.67□□□□□ -0.7
USP49-201ENST00000373006 ONECUT1Q9UBC0 465 aa10.67□□□□□ -0.7
USP49-201ENST00000373006 TRBV25-1A0A075B6N4 114 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 E7EQL1 145 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 TNFRSF6BO95407 300 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 MT-ATP8P03928 68 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 ERCC8Q13216 396 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 ZC2HC1BQ5TFG8 222 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 PTH2Q96A98 100 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 LOC107984156A0A0G2JMH3 177 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 APOMO95445 188 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 TCF15Q12870 199 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 FOXC1Q12948 553 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 ARL17AQ8IVW1 177 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 TMEM158Q8WZ71 300 aa10.66□□□□□ -0.7
USP49-201ENST00000373006 SPANXB1Q9NS25 103 aaPredicted RBP10.66□□□□□ -0.7
USP49-201ENST00000373006 IGKCP01834 107 aa10.65□□□□□ -0.7
USP49-201ENST00000373006 PDE6HQ13956 83 aa10.65□□□□□ -0.7
USP49-201ENST00000373006 TRAV40A0A0B4J280 105 aa10.65□□□□□ -0.7
USP49-201ENST00000373006 TMEM8BA6NDV4 472 aa10.65□□□□□ -0.7
USP49-201ENST00000373006 H3BVH4 76 aa10.65□□□□□ -0.7
USP49-201ENST00000373006 IGLC6P0CF74 106 aa10.65□□□□□ -0.7
USP49-201ENST00000373006 SMIM17P0DL12 118 aa10.65□□□□□ -0.7
USP49-201ENST00000373006 HERV-K104P63124 156 aa10.65□□□□□ -0.71
USP49-201ENST00000373006 GAGE13Q4V321 117 aa10.65□□□□□ -0.71
USP49-201ENST00000373006 MRAP2Q96G30 205 aa10.65□□□□□ -0.71
USP49-201ENST00000373006 LY6HO94772 140 aa10.64□□□□□ -0.71
USP49-201ENST00000373006 FANCD2OSQ96PS1 177 aa10.64□□□□□ -0.71
USP49-201ENST00000373006 COL12A1Q99715 3063 aa10.64□□□□□ -0.71
USP49-201ENST00000373006 NBR2O15453 112 aa10.64□□□□□ -0.71
USP49-201ENST00000373006 MFAP4P55083 255 aa10.64□□□□□ -0.71
USP49-201ENST00000373006 SMAD5-AS1Q9Y6J3 95 aa10.64□□□□□ -0.71
USP49-201ENST00000373006 F8W735 103 aaPredicted RBP10.63□□□□□ -0.71
USP49-201ENST00000373006 IGHG4P01861 327 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 MAPKAPK5-AS1Q8N8E1 139 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 HIST1H4GQ99525 98 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 TRAV26-2A0A0B4J265 109 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 SHISA9B4DS77 424 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 PRAC2D3DTV9 90 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 SCGB2A1O75556 95 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 PRR30Q53SZ7 412 aaPredicted RBP10.63□□□□□ -0.71
USP49-201ENST00000373006 IGFL3Q6UXB1 125 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 RPL7P18124 248 aaKnown RBP10.63□□□□□ -0.71
USP49-201ENST00000373006 RNF182Q8N6D2 247 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 PHLDA1Q8WV24 401 aaPredicted RBP10.63□□□□□ -0.71
USP49-201ENST00000373006 RAB1BQ9H0U4 201 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 ZMAT4Q9H898 229 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 C21orf62Q9NYP8 219 aa10.63□□□□□ -0.71
USP49-201ENST00000373006 NCBP2LA6PVI3 153 aaKnown RBP10.62□□□□□ -0.71
USP49-201ENST00000373006 LY6LH3BQJ8 138 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 KLRD1Q13241 179 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 DTX2Q86UW9 622 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 DYNAPQ8N1N2 210 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 DEFB104AQ8WTQ1 72 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 ANAPC13Q9BS18 74 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 MRPL35Q9NZE8 188 aaKnown RBP10.62□□□□□ -0.71
USP49-201ENST00000373006 IGHV3-66A0A0C4DH42 116 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 CEND1Q8N111 149 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 C3orf56Q8N813 242 aa10.62□□□□□ -0.71
USP49-201ENST00000373006 IGHV3OR16-13A0A075B7E8 117 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 IGHV3-74A0A0B4J1X5 117 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 FABP5P3A8MUU1 101 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 DPM2O94777 84 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 CLEC3BP05452 202 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 HIGD1BQ9P298 99 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 TRBV20-1A0A075B6N2 111 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 TRGV3P03979 118 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 NDPQ00604 133 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 KLK15Q9H2R5 256 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 NXT2Q9NPJ8 142 aaKnown RBP10.61□□□□□ -0.71
USP49-201ENST00000373006 IGLV11-55A0A075B6I3 123 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 FAM90A27PA6NNH2 459 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 UFC1Q9Y3C8 167 aa10.61□□□□□ -0.71
USP49-201ENST00000373006 NDUFA3O95167 84 aa10.6□□□□□ -0.71
USP49-201ENST00000373006 IL17RELQ6ZVW7 336 aa10.6□□□□□ -0.71
USP49-201ENST00000373006 LINC01560Q8TB33 94 aa10.6□□□□□ -0.71
USP49-201ENST00000373006 RNF5Q99942 180 aa10.6□□□□□ -0.71
USP49-201ENST00000373006 IGLL5B9A064 214 aa10.6□□□□□ -0.71
USP49-201ENST00000373006 CFHR4Q92496 578 aa10.6□□□□□ -0.71
USP49-201ENST00000373006 MRPL16Q9NX20 251 aaKnown RBP10.6□□□□□ -0.71
USP49-201ENST00000373006 CTSGP08311 255 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 PSMB2P49721 201 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 Q6ZQT7 251 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 SMIM20Q8N5G0 67 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 PIFOQ8TCI5 191 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 DPM3Q9P2X0 92 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 EFNA4P52798 201 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 C5orf64Q2M2E5 130 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 COX8CQ7Z4L0 72 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 TM2D2Q9BX73 214 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 LINC01548A6NM66 108 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 J3KRW8 73 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 C8orf86Q6ZUL3 223 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 CYSLTR1Q9Y271 337 aa10.59□□□□□ -0.71
USP49-201ENST00000373006 FOXI2Q6ZQN5 318 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 HIF1ANQ9NWT6 349 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 C11orf21Q9P2W6 132 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 IGHV3-49A0A0A0MS15 119 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 PRSS29PA6NIE9 313 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 E9PLD3 99 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms