RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 TMEM75Q8N9X5 138 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 EML6Q6ZMW3 1958 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 IGHV7-4-1A0A0J9YVY3 117 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 C2orf82Q6UX34 121 aa12.39□□□□□ -0.43
PTPRF-201ENST00000359947 HSD52Q0P140 79 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 ZC2HC1BQ5TFG8 222 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 ZNF524Q96C55 264 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 ATP6V0BQ99437 205 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 FGF16O43320 207 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 HLA-DRB4P13762 266 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 HLA-DRB4X5D2U9 266 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 PIFOQ8TCI5 191 aa12.38□□□□□ -0.43
PTPRF-201ENST00000359947 IGLV1-44P01699 117 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 ELANEP08246 267 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 SPRNQ5BIV9 151 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 CHAC1Q9BUX1 264 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 LMO1P25800 156 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 TANC1Q9C0D5 1861 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 HIST1H2BLQ99880 126 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 XCL1P47992 114 aa12.37□□□□□ -0.43
PTPRF-201ENST00000359947 TRBV19A0A075B6N1 114 aa12.36□□□□□ -0.43
PTPRF-201ENST00000359947 GAGE2AQ6NT46 116 aa12.36□□□□□ -0.43
PTPRF-201ENST00000359947 GP9P14770 177 aa12.36□□□□□ -0.43
PTPRF-201ENST00000359947 WT1-ASQ06250 92 aa12.36□□□□□ -0.43
PTPRF-201ENST00000359947 STPG4Q8N801 248 aa12.36□□□□□ -0.43
PTPRF-201ENST00000359947 SLX1AQ9BQ83 275 aa12.36□□□□□ -0.43
PTPRF-201ENST00000359947 C9orf66Q5T8R8 295 aa12.36□□□□□ -0.43
PTPRF-201ENST00000359947 SDHAF1A6NFY7 115 aa12.35□□□□□ -0.43
PTPRF-201ENST00000359947 FHL1Q13642 323 aa12.35□□□□□ -0.43
PTPRF-201ENST00000359947 HLA-DMBP28068 263 aa12.35□□□□□ -0.43
PTPRF-201ENST00000359947 Q6ZS49 121 aa12.35□□□□□ -0.43
PTPRF-201ENST00000359947 CYYR1Q96J86 154 aa12.35□□□□□ -0.43
PTPRF-201ENST00000359947 TRAV1-1A0A0B4J248 108 aa12.35□□□□□ -0.43
PTPRF-201ENST00000359947 SPRY2O43597 315 aa12.34□□□□□ -0.43
PTPRF-201ENST00000359947 COX11Q9Y6N1 276 aa12.34□□□□□ -0.43
PTPRF-201ENST00000359947 BLCAPP62952 87 aa12.34□□□□□ -0.43
PTPRF-201ENST00000359947 DEFB105AQ8NG35 78 aa12.34□□□□□ -0.43
PTPRF-201ENST00000359947 U3KQE9 123 aa12.34□□□□□ -0.43
PTPRF-201ENST00000359947 TAL2Q16559 108 aa12.34□□□□□ -0.43
PTPRF-201ENST00000359947 CTSZQ9UBR2 303 aa12.33□□□□□ -0.43
PTPRF-201ENST00000359947 OTOGLQ3ZCN5 2332 aa12.33□□□□□ -0.43
PTPRF-201ENST00000359947 H3BMM0 161 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 SYS1-DBNDD2H3BUS1 97 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 RPL18AQ02543 176 aaKnown RBP12.33□□□□□ -0.44
PTPRF-201ENST00000359947 C1orf194Q5T5A4 169 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 UBE2WQ96B02 151 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 C2orf66Q6UXQ4 117 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 GTSF1LQ9H1H1 148 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 FNDC10F2Z333 226 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 IGHV2-70P01814 119 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 SCRT2Q9NQ03 307 aa12.33□□□□□ -0.44
PTPRF-201ENST00000359947 GNRH2O43555 120 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 C15orf65H3BRN8 121 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 DEFB4AO15263 64 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 LINC01559Q495D7 138 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 C17orf77Q96MU5 243 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 H3BRN7 92 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 SPINK8P0C7L1 97 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 ZFP36P26651 326 aaKnown RBP12.32□□□□□ -0.44
PTPRF-201ENST00000359947 ADORA2A-AS1P86434 159 aa12.32□□□□□ -0.44
PTPRF-201ENST00000359947 IGHV3-30P01768 117 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 IGHV3-33P01772 117 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 C3orf79P0CE67 100 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 IGHV3-30-3P0DP02 117 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 IGHV3-30-5P0DP03 117 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 DNAJC30Q96LL9 226 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 ZNF124Q15973 351 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 ARTNQ5T4W7 220 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 UBE2CO00762 179 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 TMEM190Q8WZ59 177 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 PRR25Q96S07 402 aa12.31□□□□□ -0.44
PTPRF-201ENST00000359947 PRSS57Q6UWY2 283 aa12.3□□□□□ -0.44
PTPRF-201ENST00000359947 IGLV10-54A0A075B6I4 117 aa12.3□□□□□ -0.44
PTPRF-201ENST00000359947 IGHV4-4A0A075B6R2 117 aa12.3□□□□□ -0.44
PTPRF-201ENST00000359947 TRBV24-1A0A075B6N3 115 aa12.3□□□□□ -0.44
PTPRF-201ENST00000359947 CENPVL3A0A0U1RRI6 287 aa12.3□□□□□ -0.44
PTPRF-201ENST00000359947 PRSS46E5RG02 174 aa12.3□□□□□ -0.44
PTPRF-201ENST00000359947 HIST3H2BBQ8N257 126 aa12.3□□□□□ -0.44
PTPRF-201ENST00000359947 F8W735 103 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-201ENST00000359947 LINC00311Q8N616 119 aa12.29□□□□□ -0.44
PTPRF-201ENST00000359947 RBMY1FQ15415 496 aaKnown RBP12.29□□□□□ -0.44
PTPRF-201ENST00000359947 IGHV1-24A0A0C4DH33 117 aa12.29□□□□□ -0.44
PTPRF-201ENST00000359947 NDUFS5O43920 106 aa12.29□□□□□ -0.44
PTPRF-201ENST00000359947 MRPL51Q4U2R6 128 aaKnown RBP12.29□□□□□ -0.44
PTPRF-201ENST00000359947 MRPL53Q96EL3 112 aaKnown RBP12.29□□□□□ -0.44
PTPRF-201ENST00000359947 PLXNA2O75051 1894 aa12.29□□□□□ -0.44
PTPRF-201ENST00000359947 C9JAW5 83 aa12.28□□□□□ -0.44
PTPRF-201ENST00000359947 WNK1Q9H4A3 2382 aa12.28□□□□□ -0.44
PTPRF-201ENST00000359947 GFRA4Q9GZZ7 299 aa12.28□□□□□ -0.44
PTPRF-201ENST00000359947 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-201ENST00000359947 IGKV2-29A2NJV5 120 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-201ENST00000359947 CCL18P55774 89 aa12.28□□□□□ -0.44
PTPRF-201ENST00000359947 FOXI2Q6ZQN5 318 aa12.28□□□□□ -0.44
PTPRF-201ENST00000359947 OVOL2Q9BRP0 275 aa12.28□□□□□ -0.44
PTPRF-201ENST00000359947 LY96Q9Y6Y9 160 aa12.28□□□□□ -0.44
PTPRF-201ENST00000359947 FOXE3Q13461 319 aa12.27□□□□□ -0.44
PTPRF-201ENST00000359947 KLF2Q9Y5W3 355 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-201ENST00000359947 ZC2HC1AQ96GY0 325 aa12.27□□□□□ -0.44
PTPRF-201ENST00000359947 RHOHQ15669 191 aa12.27□□□□□ -0.45
PTPRF-201ENST00000359947 FAM104BQ5XKR9 115 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 208 ms