RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 AKAP9Q99996 3911 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 TRAV8-1A0A0A6YYK1 113 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 LOC107984640A0A0U1RRK4 108 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 IGHV4-31P0DP07 118 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 AREGP15514 252 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 Q6AWC8 147 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 C11orf52Q96A22 123 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 RITA1Q96K30 269 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 CR1P17927 2039 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 GAGE12JA6NER3 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 C15orf61A6NNL5 157 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 SMKR1H3BMG3 65 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 J3QLI3 93 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 UPK2O00526 184 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 TIMM23O14925 209 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 NPFFO15130 113 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 GAGE7O76087 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 CRYGBP07316 175 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 GAGE12FP0CL80 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 GAGE12GP0CL81 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 GAGE12IP0CL82 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 SAA1P0DJI8 122 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-203ENST00000354674 EVI2AP22794 236 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 GAGE4Q13068 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 EBI3Q14213 229 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 MRGPRG-AS1Q2M3A8 158 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 TTC9CQ8N5M4 171 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 IGHV1-69DA0A0B4J2H0 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 TCRBV4S1A1TA0A5B7 111 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 IGHV1-69P01742 117 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 ZNF562Q6V9R5 426 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 GRAMD2BQ96HH9 432 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 IGF2BP2-AS1Q96M15 143 aa7.9□□□□□ -1.14
SYNE1-203ENST00000354674 SAA4P35542 130 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 TMEM167AQ8TBQ9 72 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 CHCHD1Q96BP2 118 aaKnown RBP7.89□□□□□ -1.15
SYNE1-203ENST00000354674 VPREB3Q9UKI3 123 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 IGHV3-72A0A0B4J1Y9 119 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 CRLF1O75462 422 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 TTC32Q5I0X7 151 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 ZFP2Q6ZN57 461 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 ZNF414Q96IQ9 312 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 C7orf69Q9H7B7 122 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 PRNDQ9UKY0 176 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 POLQO75417 2590 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 ABCA12Q86UK0 2595 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 FABP5P3A8MUU1 101 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 AVPP01185 164 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 MEIG1Q5JSS6 88 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 Q6ZQT7 251 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 Q8N6K4 173 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 OR4X2Q8NGF9 303 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 TXNDC17Q9BRA2 123 aa7.89□□□□□ -1.15
SYNE1-203ENST00000354674 TRAV4A0A0B4J268 109 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 MPDU1O75352 247 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 OR2J3O76001 311 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 KLF17Q5JT82 389 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-203ENST00000354674 WFDC11Q8NEX6 87 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 NPBQ8NG41 125 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 DAZAP1Q96EP5 407 aaKnown RBP7.88□□□□□ -1.15
SYNE1-203ENST00000354674 HIST1H4GQ99525 98 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 SMCPP49901 116 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-203ENST00000354674 MAPK1IP1LQ8NDC0 245 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 OR1L8Q8NGR8 309 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 TCF19Q9Y242 345 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 NAV3Q8IVL0 2385 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 UNC79Q9P2D8 2635 aa7.88□□□□□ -1.15
SYNE1-203ENST00000354674 NDUFA3O95167 84 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 MOSP00540 346 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 P01737 135 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 SLC25A5P05141 298 aaKnown RBP7.87□□□□□ -1.15
SYNE1-203ENST00000354674 HSPE1P61604 102 aaKnown RBP7.87□□□□□ -1.15
SYNE1-203ENST00000354674 VMA21Q3ZAQ7 101 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 SVEP1Q4LDE5 3571 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 TRBV25-1A0A075B6N4 114 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 TRAV40A0A0B4J280 105 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 FSHBP01225 129 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 PRSS1P07477 247 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 IGHV4-38-2P0DP08 117 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 CNTFRP26992 372 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 C12orf74Q32Q52 190 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 CIARTQ8N365 385 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-203ENST00000354674 OR9G4Q8NGQ1 327 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 TMEM160Q9NX00 188 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 NAV2Q8IVL1 2488 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 IGKV1OR2-108A0A075B7D4 117 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 E9PLD3 99 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 INS-IGF2F8WCM5 200 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 ARMS2P0C7Q2 107 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 CT45A10P0DMU9 189 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 PHLDA1Q8WV24 401 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-203ENST00000354674 SIGLEC9Q9Y336 463 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 LY96Q9Y6Y9 160 aa7.87□□□□□ -1.15
SYNE1-203ENST00000354674 PRRC2AP48634 2157 aaKnown RBP7.86□□□□□ -1.15
SYNE1-203ENST00000354674 ZNF469Q96JG9 3925 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-203ENST00000354674 GAGE2BQ13066 116 aa7.86□□□□□ -1.15
SYNE1-203ENST00000354674 GAGE2EQ4V326 116 aa7.86□□□□□ -1.15
SYNE1-203ENST00000354674 RUSC1-AS1Q66K80 236 aa7.86□□□□□ -1.15
SYNE1-203ENST00000354674 TPSG1Q9NRR2 321 aa7.86□□□□□ -1.15
SYNE1-203ENST00000354674 NDUFA4L2Q9NRX3 87 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms