RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TP53TG1Q9Y2A0 90 aa16.12■□□□□ 0.17
SDC3-202ENST00000339394 TRBV6-1A0A0K0K1D8 114 aa16.11■□□□□ 0.17
SDC3-202ENST00000339394 TMEM250H0YL14 139 aa16.11■□□□□ 0.17
SDC3-202ENST00000339394 LTAP01374 205 aa16.11■□□□□ 0.17
SDC3-202ENST00000339394 SRSF3P84103 164 aaKnown RBP16.11■□□□□ 0.17
SDC3-202ENST00000339394 BTN1A1Q13410 526 aa16.11■□□□□ 0.17
SDC3-202ENST00000339394 C8orf49Q96NF6 230 aa16.11■□□□□ 0.17
SDC3-202ENST00000339394 TRAV12-3A0A0B4J271 114 aa16.1■□□□□ 0.17
SDC3-202ENST00000339394 ZMAT4Q9H898 229 aa16.1■□□□□ 0.17
SDC3-202ENST00000339394 ZFP30Q9Y2G7 519 aa16.1■□□□□ 0.17
SDC3-202ENST00000339394 IGHV3OR16-12A0A075B7B8 117 aa16.09■□□□□ 0.17
SDC3-202ENST00000339394 C7orf71A4D174 169 aa16.09■□□□□ 0.17
SDC3-202ENST00000339394 NDUFS6O75380 124 aaKnown RBP16.09■□□□□ 0.17
SDC3-202ENST00000339394 NHLRC4P0CG21 123 aaPredicted RBP16.09■□□□□ 0.17
SDC3-202ENST00000339394 ZNF705AQ6ZN79 300 aaPredicted RBP16.09■□□□□ 0.17
SDC3-202ENST00000339394 GOLT1BQ9Y3E0 138 aa16.09■□□□□ 0.17
SDC3-202ENST00000339394 ZNF324O75467 553 aaPredicted RBP16.09■□□□□ 0.17
SDC3-202ENST00000339394 SRP19P09132 144 aaKnown RBP16.09■□□□□ 0.17
SDC3-202ENST00000339394 TAS2R60P59551 318 aa16.09■□□□□ 0.17
SDC3-202ENST00000339394 PEA15Q15121 130 aa16.09■□□□□ 0.17
SDC3-202ENST00000339394 Q6ZQT7 251 aa16.09■□□□□ 0.17
SDC3-202ENST00000339394 C9JQL5 133 aa16.08■□□□□ 0.16
SDC3-202ENST00000339394 BAGE2Q86Y30 109 aa16.08■□□□□ 0.16
SDC3-202ENST00000339394 OR11H2Q8NH07 326 aa16.08■□□□□ 0.16
SDC3-202ENST00000339394 C20orf144Q9BQM9 153 aa16.08■□□□□ 0.16
SDC3-202ENST00000339394 TMEM208Q9BTX3 173 aa16.08■□□□□ 0.16
SDC3-202ENST00000339394 SMDT1Q9H4I9 107 aa16.08■□□□□ 0.16
SDC3-202ENST00000339394 COL7A1Q02388 2944 aa16.08■□□□□ 0.16
SDC3-202ENST00000339394 RAB19A4D1S5 217 aa16.07■□□□□ 0.16
SDC3-202ENST00000339394 CEBPGP53567 150 aa16.07■□□□□ 0.16
SDC3-202ENST00000339394 SMUG1Q53HV7 270 aa16.07■□□□□ 0.16
SDC3-202ENST00000339394 NIPSNAP3BQ9BS92 247 aa16.07■□□□□ 0.16
SDC3-202ENST00000339394 GCGP01275 180 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 ZNF80P51504 273 aaPredicted RBP16.06■□□□□ 0.16
SDC3-202ENST00000339394 Q6AWC8 147 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 COX8CQ7Z4L0 72 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 TMEM183AQ8IXX5 376 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 TMEM256Q8N2U0 113 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 NHLRC2Q8NBF2 726 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 LINC01587Q99440 93 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 PARLQ9H300 379 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 X6R8D5 127 aa16.06■□□□□ 0.16
SDC3-202ENST00000339394 TRBV20OR9-2A0A075B6H5 130 aa16.05■□□□□ 0.16
SDC3-202ENST00000339394 H7BYZ3 331 aa16.05■□□□□ 0.16
SDC3-202ENST00000339394 CENPWQ5EE01 88 aa16.05■□□□□ 0.16
SDC3-202ENST00000339394 MLST8Q9BVC4 326 aa16.05■□□□□ 0.16
SDC3-202ENST00000339394 PRM2P04554 102 aa16.04■□□□□ 0.16
SDC3-202ENST00000339394 ZNF674Q2M3X9 581 aa16.04■□□□□ 0.16
SDC3-202ENST00000339394 ZC2HC1AQ96GY0 325 aa16.04■□□□□ 0.16
SDC3-202ENST00000339394 GNG4P50150 75 aa16.04■□□□□ 0.16
SDC3-202ENST00000339394 TRAV21A0A0B4J279 112 aa16.03■□□□□ 0.16
SDC3-202ENST00000339394 HTN1P15515 57 aa16.03■□□□□ 0.16
SDC3-202ENST00000339394 NEU1Q99519 415 aa16.03■□□□□ 0.16
SDC3-202ENST00000339394 TENM3Q9P273 2699 aa16.03■□□□□ 0.16
SDC3-202ENST00000339394 IGLV2-8P01709 118 aa16.02■□□□□ 0.16
SDC3-202ENST00000339394 PFN1P07737 140 aaKnown RBP16.02■□□□□ 0.16
SDC3-202ENST00000339394 CRIP1P50238 77 aa16.02■□□□□ 0.16
SDC3-202ENST00000339394 PYGO2Q9BRQ0 406 aa16.02■□□□□ 0.16
SDC3-202ENST00000339394 PGPEP1LA6NFU8 196 aa16.01■□□□□ 0.15
SDC3-202ENST00000339394 ZNF705GA8MUZ8 300 aaPredicted RBP16■□□□□ 0.15
SDC3-202ENST00000339394 C9JCJ5 164 aa16■□□□□ 0.15
SDC3-202ENST00000339394 LINC00862A6NCI5 91 aa16■□□□□ 0.15
SDC3-202ENST00000339394 SMIM9A6NGZ8 99 aa16■□□□□ 0.15
SDC3-202ENST00000339394 MIFP14174 115 aa16■□□□□ 0.15
SDC3-202ENST00000339394 RRN3P1Q2M238 152 aa16■□□□□ 0.15
SDC3-202ENST00000339394 MUC21Q5SSG8 566 aa16■□□□□ 0.15
SDC3-202ENST00000339394 SMIM12Q96EX1 92 aa16■□□□□ 0.15
SDC3-202ENST00000339394 SMIM7Q9BQ49 75 aa16■□□□□ 0.15
SDC3-202ENST00000339394 FABP5P3A8MUU1 101 aa15.99■□□□□ 0.15
SDC3-202ENST00000339394 ZNF727A8MUV8 499 aa15.99■□□□□ 0.15
SDC3-202ENST00000339394 AZU1P20160 251 aa15.99■□□□□ 0.15
SDC3-202ENST00000339394 FAM162BQ5T6X4 162 aa15.99■□□□□ 0.15
SDC3-202ENST00000339394 Q8NAQ8 132 aa15.99■□□□□ 0.15
SDC3-202ENST00000339394 IGHV1OR15-1A0A075B7D0 117 aa15.98■□□□□ 0.15
SDC3-202ENST00000339394 IGHV4-28A0A0C4DH34 117 aa15.98■□□□□ 0.15
SDC3-202ENST00000339394 FAM159AQ6UWV7 190 aa15.98■□□□□ 0.15
SDC3-202ENST00000339394 COMMD7Q86VX2 200 aa15.98■□□□□ 0.15
SDC3-202ENST00000339394 LINC00467Q9BRT7 94 aa15.98■□□□□ 0.15
SDC3-202ENST00000339394 C11orf21Q9P2W6 132 aa15.98■□□□□ 0.15
SDC3-202ENST00000339394 NAGKQ9UJ70 344 aa15.98■□□□□ 0.15
SDC3-202ENST00000339394 MGST1P10620 155 aaKnown RBP15.97■□□□□ 0.15
SDC3-202ENST00000339394 PRR27Q6MZM9 219 aa15.97■□□□□ 0.15
SDC3-202ENST00000339394 OCC1Q8TAD7 63 aa15.97■□□□□ 0.15
SDC3-202ENST00000339394 U3KQK5 164 aa15.97■□□□□ 0.15
SDC3-202ENST00000339394 DEFB4AO15263 64 aa15.96■□□□□ 0.15
SDC3-202ENST00000339394 SH2D1AO60880 128 aa15.96■□□□□ 0.15
SDC3-202ENST00000339394 ANXA2RQ3ZCQ2 193 aa15.96■□□□□ 0.15
SDC3-202ENST00000339394 SOHLH1Q5JUK2 328 aa15.96■□□□□ 0.15
SDC3-202ENST00000339394 UQCC3Q6UW78 93 aa15.96■□□□□ 0.15
SDC3-202ENST00000339394 EIF4E3Q8N5X7 224 aaKnown RBP15.96■□□□□ 0.15
SDC3-202ENST00000339394 CBY3A6NI87 242 aa15.96■□□□□ 0.14
SDC3-202ENST00000339394 TDRG1Q3Y452 100 aa15.96■□□□□ 0.14
SDC3-202ENST00000339394 FAM74A3Q4VXF1 159 aa15.96■□□□□ 0.14
SDC3-202ENST00000339394 TP53TG3Q9ULZ0 132 aa15.96■□□□□ 0.14
SDC3-202ENST00000339394 TGP01266 2768 aa15.95■□□□□ 0.14
SDC3-202ENST00000339394 K7EN84 100 aa15.95■□□□□ 0.14
SDC3-202ENST00000339394 SFTA3P0C7M3 94 aa15.95■□□□□ 0.14
SDC3-202ENST00000339394 RNASE8Q8TDE3 154 aaKnown RBP15.95■□□□□ 0.14
SDC3-202ENST00000339394 A0A0J9YWU9 116 aa15.94■□□□□ 0.14
SDC3-202ENST00000339394 OR5I1Q13606 314 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms