RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MRPS12O15235 138 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 GAGE5Q13069 117 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 GAGE6Q13070 117 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 PVRIGQ6DKI7 326 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 CYSLTR1Q9Y271 337 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 K7EM74 188 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 IGHG3P01860 377 aa10.49□□□□□ -0.73
CCDC88C-201ENST00000331194 FAM27E3Q08E93 113 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 PPP1R27Q86WC6 154 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 RNF125Q96EQ8 232 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 IGHV3-23P01764 117 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 XGP55808 180 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 FOXI1Q12951 378 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 TEX36Q5VZQ5 186 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 TTC9CQ8N5M4 171 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 PIFOQ8TCI5 191 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 PRR25Q96S07 402 aa10.48□□□□□ -0.73
CCDC88C-201ENST00000331194 MED13LQ71F56 2210 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 MORN3Q6PF18 240 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 KLK15Q9H2R5 256 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 ZFYVE26Q68DK2 2539 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 IGHV3-35A0A0C4DH35 117 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 K7EIM0 57 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 ZFP2Q6ZN57 461 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 AAMDCQ9H7C9 122 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 FAM90A27PA6NNH2 459 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 TGFAP01135 160 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 TRGV3P03979 118 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 RPL32P62910 135 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 ERCC8Q13216 396 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 PLGLAQ15195 96 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 ZNF502Q8TBZ5 544 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 FAM110AQ9BQ89 295 aa10.47□□□□□ -0.73
CCDC88C-201ENST00000331194 ABCA4P78363 2273 aa10.46□□□□□ -0.73
CCDC88C-201ENST00000331194 CRYGBP07316 175 aa10.46□□□□□ -0.73
CCDC88C-201ENST00000331194 IGLC6P0CF74 106 aa10.46□□□□□ -0.74
CCDC88C-201ENST00000331194 DTX2Q86UW9 622 aa10.46□□□□□ -0.74
CCDC88C-201ENST00000331194 C1QTNF4Q9BXJ3 329 aa10.46□□□□□ -0.74
CCDC88C-201ENST00000331194 FOXC1Q12948 553 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 TMEM30BQ3MIR4 351 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 Q6ZUT4 128 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 TRBV7-3A0A075B6L6 115 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 LOC107984156A0A0G2JMH3 177 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 PSMB2P49721 201 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 Q6ZQT7 251 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 ARL17AQ8IVW1 177 aa10.45□□□□□ -0.74
CCDC88C-201ENST00000331194 IGHV1-8P0DP01 117 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 LOXP28300 417 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 ID1P41134 155 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 SPRY2O43597 315 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 NDUFB3O43676 98 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 COX7A1P24310 79 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 PRSS29PA6NIE9 313 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 LYPD1Q8N2G4 141 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 RPEQ96AT9 228 aa10.44□□□□□ -0.74
CCDC88C-201ENST00000331194 LINC01549A6NIU2 74 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 HOXA3O43365 443 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 HLA-DRB4P13762 266 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 SRSF1Q07955 248 aaKnown RBP eCLIP10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 NXT2Q9NPJ8 142 aaKnown RBP10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 HLA-DRB4X5D2U9 266 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 IGLV2-18A0A075B6J9 118 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 IGHV1-3A0A0C4DH29 117 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 PRAC2D3DTV9 90 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 TNFRSF13BO14836 293 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 DLX6P56179 175 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 LINC00311Q8N616 119 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 MYOZ3Q8TDC0 251 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 DEFB104AQ8WTQ1 72 aa10.43□□□□□ -0.74
CCDC88C-201ENST00000331194 SHISA9B4DS77 424 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 ATP5LO75964 103 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 IGHG4P01861 327 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 CFAP126Q5VTH2 177 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 CARD19Q96LW7 228 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 SCGB2A1O75556 95 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 CEACAM4O75871 244 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 CD40P25942 277 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 ARL3P36405 182 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 KIR2DL4Q99706 377 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 ITPR1Q14643 2758 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 GFRALQ6UXV0 394 aa10.42□□□□□ -0.74
CCDC88C-201ENST00000331194 ZFHX3Q15911 3703 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 NCBP2LA6PVI3 153 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 Q8N8P6 123 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 A0A087WX48 190 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 TMEM178BH3BS89 294 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 KLRD1Q13241 179 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 RNF182Q8N6D2 247 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 CFHR4Q92496 578 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 PSMG3-AS1Q96PY0 264 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 C11orf21Q9P2W6 132 aa10.41□□□□□ -0.74
CCDC88C-201ENST00000331194 TRBV20-1A0A075B6N2 111 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 LINC01546A6NGU7 62 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 C17orf100A8MU93 164 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 DYNAPQ8N1N2 210 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 PLEKHB2Q96CS7 222 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 SMAD5-AS1Q9Y6J3 95 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 TMEM155Q4W5P6 130 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 CITED1Q99966 193 aa10.4□□□□□ -0.74
CCDC88C-201ENST00000331194 MYMXA0A1B0GTQ4 84 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms