RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 PTPRSQ13332 1948 aa10.65□□□□□ -0.7
RFFL-201ENST00000315249 ATRAIDQ6UW56 229 aa10.65□□□□□ -0.71
RFFL-201ENST00000315249 ABCA2Q9BZC7 2435 aa10.65□□□□□ -0.71
RFFL-201ENST00000315249 TSPAN13O95857 204 aa10.65□□□□□ -0.71
RFFL-201ENST00000315249 CITED2Q99967 270 aaPredicted RBP10.65□□□□□ -0.71
RFFL-201ENST00000315249 TMEM170AQ8WVE7 144 aa10.64□□□□□ -0.71
RFFL-201ENST00000315249 PARD6GQ9BYG4 376 aaPredicted RBP10.64□□□□□ -0.71
RFFL-201ENST00000315249 VWC2LB2RUY7 222 aa10.64□□□□□ -0.71
RFFL-201ENST00000315249 SMPXQ9UHP9 88 aa10.64□□□□□ -0.71
RFFL-201ENST00000315249 H3BRN7 92 aa10.64□□□□□ -0.71
RFFL-201ENST00000315249 IGKV1-39P01597 117 aa10.64□□□□□ -0.71
RFFL-201ENST00000315249 IGKV1D-39P04432 117 aa10.64□□□□□ -0.71
RFFL-201ENST00000315249 TMEM243Q9BU79 118 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 LINC00587B1AMM8 73 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 THAP8Q8NA92 274 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 RMI2Q96E14 147 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 ATP6V0BQ99437 205 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 IGHV4OR15-8A0A075B7B6 117 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 A0A087WW49 117 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 IGHV7-81A0A0B4J1V7 117 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 LINC01549A6NIU2 74 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 IGKV2D-24A0A075B6R9 120 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 IGKV1OR2-108A0A075B7D4 117 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 A8MXK9 166 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 HLA-DMBP28068 263 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 PRIMA1Q86XR5 153 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 AJUBAQ96IF1 538 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 GSN-AS1Q9NRJ2 163 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 TRAV1-1A0A0B4J248 108 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 DNAJC9-AS1A6NH13 148 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 IGLC1P0CG04 106 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 C5orf56Q8N8D9 126 aa10.63□□□□□ -0.71
RFFL-201ENST00000315249 NHP2Q9NX24 153 aaKnown RBP10.63□□□□□ -0.71
RFFL-201ENST00000315249 TMEM213A2RRL7 107 aa10.62□□□□□ -0.71
RFFL-201ENST00000315249 FBXL19-AS1Q494R0 122 aa10.62□□□□□ -0.71
RFFL-201ENST00000315249 CLPSL1A2RUU4 121 aa10.62□□□□□ -0.71
RFFL-201ENST00000315249 IGLV3-1P01715 115 aa10.62□□□□□ -0.71
RFFL-201ENST00000315249 ZNF625Q96I27 306 aaPredicted RBP10.62□□□□□ -0.71
RFFL-201ENST00000315249 CENPFP49454 3210 aa10.62□□□□□ -0.71
RFFL-201ENST00000315249 FOXI2Q6ZQN5 318 aa10.62□□□□□ -0.71
RFFL-201ENST00000315249 M0R2P5 195 aa10.62□□□□□ -0.71
RFFL-201ENST00000315249 NUP210LQ5VU65 1888 aa10.61□□□□□ -0.71
RFFL-201ENST00000315249 ESM1Q9NQ30 184 aa10.61□□□□□ -0.71
RFFL-201ENST00000315249 FGF23Q9GZV9 251 aaPredicted RBP10.61□□□□□ -0.71
RFFL-201ENST00000315249 TMEM242Q9NWH2 141 aa10.61□□□□□ -0.71
RFFL-201ENST00000315249 U3KQE9 123 aa10.61□□□□□ -0.71
RFFL-201ENST00000315249 RASL11AQ6T310 242 aa10.61□□□□□ -0.71
RFFL-201ENST00000315249 GGTLC3B5MD39 225 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 DDTP30046 118 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 TRAV26-2A0A0B4J265 109 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 C17orf77Q96MU5 243 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 IGLC7A0M8Q6 106 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 I3L3M4 83 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 ZFYVE26Q68DK2 2539 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 Q8N9W7 124 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 PLEKHB2Q96CS7 222 aa10.6□□□□□ -0.71
RFFL-201ENST00000315249 Q6ZQT7 251 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 ZNF491Q8N8L2 437 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 C8orf31Q8N9H6 132 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 WIPF2Q8TF74 440 aaPredicted RBP10.59□□□□□ -0.71
RFFL-201ENST00000315249 PRR25Q96S07 402 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 HCFC1P51610 2035 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 TNFRSF6BO95407 300 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 PFN2P35080 140 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 SLAQ13239 276 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 NKAPP1Q8N9T2 125 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 LY6G5BQ8NDX9 201 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 TIMM21Q9BVV7 248 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 UTRNP46939 3433 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 TMEM238C9JI98 176 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 SMAD5-AS1Q9Y6J3 95 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 F8WEM9 126 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 DEFB4AO15263 64 aa10.59□□□□□ -0.71
RFFL-201ENST00000315249 LOXL1Q08397 574 aaPredicted RBP10.58□□□□□ -0.72
RFFL-201ENST00000315249 RNF138Q8WVD3 245 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 LAMTOR3Q9UHA4 124 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 TP53TG1Q9Y2A0 90 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 SPART-AS1P0CW21 52 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 CCL18P55774 89 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 DMRT1Q9Y5R6 373 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 A0A1B0GWB2 263 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 NPBQ8NG41 125 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 SPAG8Q99932 426 aaPredicted RBP10.58□□□□□ -0.72
RFFL-201ENST00000315249 IGHV4-31P0DP07 118 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 ASPHD1Q5U4P2 390 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 MRPL53Q96EL3 112 aaKnown RBP10.58□□□□□ -0.72
RFFL-201ENST00000315249 NEGR1Q7Z3B1 354 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 K7ERU9 68 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 GNRH2O43555 120 aa10.58□□□□□ -0.72
RFFL-201ENST00000315249 CXCL1P09341 107 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 TTC32Q5I0X7 151 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 LEPROTO15243 131 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 PLA2G2AP14555 144 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 DEFB135Q30KP9 77 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 CYYR1Q96J86 154 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 CFPP27918 469 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 Q8N7P7 452 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 HLA-DRB4P13762 266 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 HLA-DRB4X5D2U9 266 aa10.57□□□□□ -0.72
RFFL-201ENST00000315249 MYMXA0A1B0GTQ4 84 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms