RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 CCDC144NLQ6NUI1 221 aa10.4□□□□□ -0.75
SKA3-202ENST00000314759 FOXC2Q99958 501 aa10.4□□□□□ -0.75
SKA3-202ENST00000314759 ODF3BA8MYP8 253 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 IGKCP01834 107 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 INSL3P51460 131 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 Q5PR19 223 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 FOXI2Q6ZQN5 318 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 TM2D2Q9BX73 214 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 ANKHD1Q8IWZ3 2542 aaKnown RBP10.39□□□□□ -0.75
SKA3-202ENST00000314759 DTX2Q86UW9 622 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 TMEM158Q8WZ71 300 aa10.39□□□□□ -0.75
SKA3-202ENST00000314759 TMEM8BA6NDV4 472 aa10.38□□□□□ -0.75
SKA3-202ENST00000314759 LINC01559Q495D7 138 aa10.38□□□□□ -0.75
SKA3-202ENST00000314759 SMPXQ9UHP9 88 aa10.38□□□□□ -0.75
SKA3-202ENST00000314759 SPTBN2O15020 2390 aa10.38□□□□□ -0.75
SKA3-202ENST00000314759 SCGB1A1P11684 91 aa10.38□□□□□ -0.75
SKA3-202ENST00000314759 RNF182Q8N6D2 247 aa10.38□□□□□ -0.75
SKA3-202ENST00000314759 TMEM160Q9NX00 188 aa10.38□□□□□ -0.75
SKA3-202ENST00000314759 TRAV40A0A0B4J280 105 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 PSMG4Q5JS54 123 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 IL17RELQ6ZVW7 336 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 IGLV2-18A0A075B6J9 118 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 IGKV3D-20A0A0C4DH25 116 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 F8W1H4 67 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 ATP5G2Q06055 141 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 ZNF479Q96JC4 524 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 ATP6V0BQ99437 205 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 CACNA1BQ00975 2339 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 PRTN3P24158 256 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 Q8N8P6 123 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 C11orf21Q9P2W6 132 aa10.37□□□□□ -0.75
SKA3-202ENST00000314759 TLN1Q9Y490 2541 aaKnown RBP10.36□□□□□ -0.75
SKA3-202ENST00000314759 DPM2O94777 84 aa10.36□□□□□ -0.75
SKA3-202ENST00000314759 TRGV3P03979 118 aa10.36□□□□□ -0.75
SKA3-202ENST00000314759 C12orf74Q32Q52 190 aa10.36□□□□□ -0.75
SKA3-202ENST00000314759 Q8N6K4 173 aa10.36□□□□□ -0.75
SKA3-202ENST00000314759 GRNP28799 593 aaKnown RBP10.36□□□□□ -0.75
SKA3-202ENST00000314759 LCNL1Q6ZST4 164 aa10.36□□□□□ -0.75
SKA3-202ENST00000314759 SPATA25Q9BR10 227 aa10.36□□□□□ -0.75
SKA3-202ENST00000314759 MRPL35Q9NZE8 188 aaKnown RBP10.36□□□□□ -0.75
SKA3-202ENST00000314759 IGHV7-81A0A0B4J1V7 117 aa10.35□□□□□ -0.75
SKA3-202ENST00000314759 M0R1W7 72 aa10.35□□□□□ -0.75
SKA3-202ENST00000314759 ZFHX2Q9C0A1 2572 aaPredicted RBP10.35□□□□□ -0.75
SKA3-202ENST00000314759 MED13LQ71F56 2210 aa10.35□□□□□ -0.75
SKA3-202ENST00000314759 BUB3O43684 328 aa10.35□□□□□ -0.75
SKA3-202ENST00000314759 SCGB2A1O75556 95 aa10.35□□□□□ -0.75
SKA3-202ENST00000314759 ATP5LO75964 103 aa10.35□□□□□ -0.75
SKA3-202ENST00000314759 WFDC12Q8WWY7 111 aa10.35□□□□□ -0.75
SKA3-202ENST00000314759 IGHV3-66A0A0C4DH42 116 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 RAB9AP51151 201 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 VMO1Q7Z5L0 202 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 TRAV26-2A0A0B4J265 109 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 AGPAT4-IT1Q9H0P7 198 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 A0A1B0GV72 72 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 RBAKDNA6NC62 111 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 C15orf32Q32M92 178 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 NRACQ8N912 160 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 ZFAND3Q9H8U3 227 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 PRO0461Q9UI25 63 aa10.34□□□□□ -0.75
SKA3-202ENST00000314759 CLEC3BP05452 202 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 VKORC1Q9BQB6 163 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 IGHV3OR16-13A0A075B7E8 117 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 IGHV3-74A0A0B4J1X5 117 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 EBI3Q14213 229 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 GAGE13Q4V321 117 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 Q6ZQT7 251 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 ZNF502Q8TBZ5 544 aa10.33□□□□□ -0.76
SKA3-202ENST00000314759 ASH1LQ9NR48 2969 aaKnown RBP10.32□□□□□ -0.76
SKA3-202ENST00000314759 IGHV7-4-1A0A0J9YVY3 117 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 J3QR89 54 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 NDUFS8O00217 210 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 TIMD4Q96H15 378 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 HIST1H4GQ99525 98 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 CLPSL1A2RUU4 121 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 FAM90A27PA6NNH2 459 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 CKS1BP61024 79 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 SRSF1Q07955 248 aaKnown RBP eCLIP10.32□□□□□ -0.761e-8■■■■□ 26.4
SKA3-202ENST00000314759 LAGE3Q14657 143 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 Q8N9W7 124 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 MYOZ3Q8TDC0 251 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 C20orf78Q9BR46 151 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 MSRB2Q9Y3D2 182 aa10.32□□□□□ -0.76
SKA3-202ENST00000314759 PRSS47A8MTI9 375 aa10.31□□□□□ -0.76
SKA3-202ENST00000314759 HLA-DRB4P13762 266 aa10.31□□□□□ -0.76
SKA3-202ENST00000314759 HLA-DRB4X5D2U9 266 aa10.31□□□□□ -0.76
SKA3-202ENST00000314759 RRN3P1Q2M238 152 aa10.31□□□□□ -0.76
SKA3-202ENST00000314759 UFC1Q9Y3C8 167 aa10.31□□□□□ -0.76
SKA3-202ENST00000314759 TRAV8-2A0A0B4J237 113 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 EFNA4P52798 201 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 SLC50A1Q9BRV3 221 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 A0A087WX48 190 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 ECSCRQ19T08 205 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 SPTA1P02549 2419 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 IGHV3-49A0A0A0MS15 119 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 A0A1B0GWB2 263 aa10.3□□□□□ -0.76
SKA3-202ENST00000314759 TRAV26-1A0A087WT03 109 aa10.29□□□□□ -0.76
SKA3-202ENST00000314759 OOSP1A8MZH6 123 aa10.29□□□□□ -0.76
SKA3-202ENST00000314759 TMEM78Q5T7P6 136 aa10.29□□□□□ -0.76
SKA3-202ENST00000314759 FAM110DQ8TAY7 271 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 187.5 ms