RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 HIST1H2BJP06899 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BOP23527 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BBP33778 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BDP58876 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BCP62807 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST2H2BEQ16778 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BHQ93079 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 MRPL53Q96EL3 112 aaKnown RBP6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BNQ99877 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 HIST1H2BMQ99879 126 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 PRORYQ9H606 182 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 FNDC1Q4ZHG4 1894 aaPredicted RBP6.11□□□□□ -1.43
SCN9A-201ENST00000303354 LECT2O14960 151 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 LY6G6CO95867 125 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 SPART-AS1P0CW21 52 aa6.11□□□□□ -1.43
SCN9A-201ENST00000303354 GBF1Q92538 1859 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 FOXL2NBQ6ZUU3 175 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 VOPP1Q96AW1 172 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 SMPXQ9UHP9 88 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 PLXNA3P51805 1871 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 C15orf53Q8NAA6 179 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 CAMK2N2Q96S95 79 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 C3orf79P0CE67 100 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 ICOSQ9Y6W8 199 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 SEM1Q6ZVN7 128 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 RPL39LQ96EH5 51 aaKnown RBP6.1□□□□□ -1.43
SCN9A-201ENST00000303354 PLA2G2EQ9NZK7 142 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 CARHSP1Q9Y2V2 147 aaKnown RBP6.1□□□□□ -1.43
SCN9A-201ENST00000303354 KLF2Q9Y5W3 355 aaPredicted RBP6.1□□□□□ -1.43
SCN9A-201ENST00000303354 AMBPP02760 352 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 RNF183Q96D59 192 aa6.1□□□□□ -1.43
SCN9A-201ENST00000303354 GHRHP01286 108 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 MPZP25189 248 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 UBE2AP49459 152 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 KLK5Q9Y337 293 aaPredicted RBP6.09□□□□□ -1.43
SCN9A-201ENST00000303354 MPDZO75970 2070 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 CHD3Q12873 2000 aaKnown RBP6.09□□□□□ -1.43
SCN9A-201ENST00000303354 Q8NA96 180 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 CACNA1BQ00975 2339 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 VWA8A3KMH1 1905 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 A0A087WWC5 75 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 FGF23Q9GZV9 251 aaPredicted RBP6.09□□□□□ -1.43
SCN9A-201ENST00000303354 SIGLEC8Q9NYZ4 499 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 KLK12Q9UKR0 248 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 ARID1AO14497 2285 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 RP1P56715 2156 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 LINC01548A6NM66 108 aa6.09□□□□□ -1.43
SCN9A-201ENST00000303354 ALPK2Q86TB3 2170 aa6.09□□□□□ -1.44
SCN9A-201ENST00000303354 C9orf153Q5TBE3 101 aa6.09□□□□□ -1.44
SCN9A-201ENST00000303354 ZNF491Q8N8L2 437 aa6.09□□□□□ -1.44
SCN9A-201ENST00000303354 HHLA3Q9XRX5 114 aa6.09□□□□□ -1.44
SCN9A-201ENST00000303354 ICE1Q9Y2F5 2266 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 IGHV7-81A0A0B4J1V7 117 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 MYO7BQ6PIF6 2116 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 NPYP01303 97 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 C11orf53Q8IXP5 236 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 TEX48A0A1B0GUV7 120 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 DAND5Q8N907 189 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 FBLN5Q9UBX5 448 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 CACNA1IQ9P0X4 2223 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 TM2D2Q9BX73 214 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 SDK2Q58EX2 2172 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 ATP5G1P05496 136 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 YPEL3P61236 119 aaPredicted RBP6.08□□□□□ -1.44
SCN9A-201ENST00000303354 ZNF726P1Q15940 193 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 C1orf194Q5T5A4 169 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 C10orf99Q6UWK7 81 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 LINC00587B1AMM8 73 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 EGR2P11161 476 aaPredicted RBP6.08□□□□□ -1.44
SCN9A-201ENST00000303354 RHOHQ15669 191 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 BOD1L2Q8IYS8 172 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 SLAQ13239 276 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 MPV17L2Q567V2 206 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 ATP6V0E2Q8NHE4 81 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 ANAPC13Q9BS18 74 aa6.08□□□□□ -1.44
SCN9A-201ENST00000303354 SEC11AP67812 179 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 MED12Q93074 2177 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 TPRP12270 2363 aaKnown RBP6.07□□□□□ -1.44
SCN9A-201ENST00000303354 LYPD1Q8N2G4 141 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 CD5LO43866 347 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 FOXI2Q6ZQN5 318 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 HIST1H2BLQ99880 126 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.07□□□□□ -1.44
SCN9A-201ENST00000303354 PRAC2D3DTV9 90 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 SYS1-DBNDD2H3BUS1 97 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 IGLC1P0CG04 106 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 MGAMO43451 1857 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 C5orf56Q8N8D9 126 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 TRAV9-1A0A075B6T8 112 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 TRAV4A0A0B4J268 109 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 LYL1P12980 280 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 Q8N7P7 452 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 C11orf45Q8TAV5 145 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 TRBV6-6A0A0A6YYG2 114 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 IGHV4-31P0DP07 118 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 AGPAT4-IT1Q9H0P7 198 aa6.07□□□□□ -1.44
SCN9A-201ENST00000303354 Q8N9W7 124 aa6.06□□□□□ -1.44
SCN9A-201ENST00000303354 GPHB5Q86YW7 130 aa6.06□□□□□ -1.44
SCN9A-201ENST00000303354 DOCK8Q8NF50 2099 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms