RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 IGHV4-28A0A0C4DH34 117 aa9.5□□□□□ -0.89
SHROOM3-201ENST00000296043 IFI6P09912 130 aa9.5□□□□□ -0.89
SHROOM3-201ENST00000296043 ZSWIM8A7E2V4 1837 aa9.5□□□□□ -0.89
SHROOM3-201ENST00000296043 CCDC168Q8NDH2 2452 aa9.5□□□□□ -0.89
SHROOM3-201ENST00000296043 RHODO00212 210 aa9.5□□□□□ -0.89
SHROOM3-201ENST00000296043 NTN3O00634 580 aaPredicted RBP9.5□□□□□ -0.89
SHROOM3-201ENST00000296043 ANKRD39Q53RE8 183 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 KIF26AQ9ULI4 1882 aaPredicted RBP9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 IGHV1OR15-1A0A075B7D0 117 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 C1orf195Q5TG92 126 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 C5orf63A6NC05 138 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 TRBV25-1A0A075B6N4 114 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 LILRA6Q6PI73 481 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 SS18Q15532 418 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 SIP14410 1827 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 IGHV4-4A0A075B6R2 117 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 MSRB2Q9Y3D2 182 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 CACNA1AO00555 2505 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 Q6ZT83 130 aa9.49□□□□□ -0.89
SHROOM3-201ENST00000296043 KIAA1549LQ6ZVL6 1849 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 I3L3M4 83 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 RBX1P62877 108 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 THAP8Q8NA92 274 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 CHCHD2Q9Y6H1 151 aaPredicted RBP9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 MLANAQ16655 118 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 C14orf132Q9NPU4 83 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 M0QXV9 152 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 CCL19Q99731 98 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 SHANK2-AS3Q9BTD1 123 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 LINC01560Q8TB33 94 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 FOXF2Q12947 444 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 THBDP07204 575 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 IGLV3-21P80748 117 aaPredicted RBP9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 NRN1LQ496H8 165 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 SMRP1Q8NCR6 262 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 CLEC2BQ92478 149 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 CFHR4Q92496 578 aa9.48□□□□□ -0.89
SHROOM3-201ENST00000296043 RPL35AP18077 110 aaKnown RBP9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 ATP1A1-AS1Q5TC04 95 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 DTX1Q86Y01 620 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 ZIC4Q8N9L1 334 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 DSCAMO60469 2012 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 PAPPA2Q9BXP8 1791 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 NEU4Q8WWR8 484 aaPredicted RBP9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 MLST8Q9BVC4 326 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 FAM236DA0A1B0GTK5 79 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 ITGBL1O95965 494 aaPredicted RBP9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 FAM236CP0DP71 79 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 PCOLCEQ15113 449 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 ZNF747Q9BV97 191 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 TRAV23DV6A0A075B6W5 121 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 NKAPP1Q8N9T2 125 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 SMIM2Q9BVW6 85 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 NRXN2Q9P2S2 1712 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 ATP6V0E2Q8NHE4 81 aa9.47□□□□□ -0.89
SHROOM3-201ENST00000296043 IGHV3-38A0A0C4DH36 116 aa9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 LTBP4Q8N2S1 1624 aa9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 B9A039 149 aa9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 CCDC179H3BU77 68 aa9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 DEFB105AQ8NG35 78 aa9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 C20orf78Q9BR46 151 aa9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 MP68P56378 58 aa9.46□□□□□ -0.89
SHROOM3-201ENST00000296043 TMEM219Q86XT9 240 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 BDP1A6H8Y1 2624 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 LTAP01374 205 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 C3orf22Q8N5N4 141 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 KLK9Q9UKQ9 250 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 WDR87Q6ZQQ6 2873 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 FAM240AA0A1B0GVK7 77 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 LINC01545Q5VT33 79 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 C10orf105Q8TEF2 133 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 C8orf31Q8N9H6 132 aa9.46□□□□□ -0.9
SHROOM3-201ENST00000296043 DTX2Q86UW9 622 aa9.45□□□□□ -0.9
SHROOM3-201ENST00000296043 SPANXB1Q9NS25 103 aaPredicted RBP9.45□□□□□ -0.9
SHROOM3-201ENST00000296043 CFHR3Q02985 330 aa9.45□□□□□ -0.9
SHROOM3-201ENST00000296043 C16orf54Q6UWD8 224 aa9.45□□□□□ -0.9
SHROOM3-201ENST00000296043 SDHAF1A6NFY7 115 aa9.45□□□□□ -0.9
SHROOM3-201ENST00000296043 C20orf204Q6ZNR8 217 aa9.45□□□□□ -0.9
SHROOM3-201ENST00000296043 ZCCHC24Q8N2G6 241 aaKnown RBP9.45□□□□□ -0.9
SHROOM3-201ENST00000296043 IGHV1-2P23083 117 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 FAM168AQ92567 244 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 HS3ST6Q96QI5 342 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 LINC01620Q4KN68 170 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 COX7B2Q8TF08 81 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 H0YJW9 148 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 NDUFC2-KCTD14E9PQ53 114 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 LYPD1Q8N2G4 141 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 IGFBPL1Q8WX77 278 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 ADAMTS7Q9UKP4 1686 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 FAM231DQ6ZW35 169 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 DAND5Q8N907 189 aa9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 COA6Q5JTJ3 125 aaKnown RBP9.44□□□□□ -0.9
SHROOM3-201ENST00000296043 TP73-AS1Q9UF72 201 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 NDUFA7O95182 113 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 SDIM1Q6ZPB5 146 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 SIGLEC9Q9Y336 463 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 SHANK3Q9BYB0 1731 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 UBE2E2Q96LR5 201 aa9.43□□□□□ -0.9
SHROOM3-201ENST00000296043 FUSP35637 526 aaKnown RBP eCLIP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms