RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZNF138P52744 262 aa12.4□□□□□ -0.42
USP4-201ENST00000265560 ZNF124Q15973 351 aa12.4□□□□□ -0.42
USP4-201ENST00000265560 SMUG1Q53HV7 270 aa12.4□□□□□ -0.42
USP4-201ENST00000265560 OR9G4Q8NGQ1 327 aa12.4□□□□□ -0.42
USP4-201ENST00000265560 TMEM160Q9NX00 188 aa12.4□□□□□ -0.42
USP4-201ENST00000265560 NDFIP1Q9BT67 221 aa12.4□□□□□ -0.43
USP4-201ENST00000265560 C11orf21Q9P2W6 132 aa12.4□□□□□ -0.43
USP4-201ENST00000265560 TRBV6-1A0A0K0K1D8 114 aa12.39□□□□□ -0.43
USP4-201ENST00000265560 SERTM2A0A1B0GWG4 89 aa12.39□□□□□ -0.43
USP4-201ENST00000265560 A8MWP6 167 aa12.39□□□□□ -0.43
USP4-201ENST00000265560 CCL24O00175 119 aa12.39□□□□□ -0.43
USP4-201ENST00000265560 TMEM136Q6ZRR5 245 aa12.39□□□□□ -0.43
USP4-201ENST00000265560 REC114Q7Z4M0 266 aa12.39□□□□□ -0.43
USP4-201ENST00000265560 NAGKQ9UJ70 344 aa12.39□□□□□ -0.43
USP4-201ENST00000265560 XKRY2A2RUG3 117 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 TMEM189A5PLL7 270 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 NPIPB6E9PJ23 425 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 ARMS2P0C7Q2 107 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 MEOX2P50222 304 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 SLAQ13239 276 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 OR10J6PQ8NGY7 276 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 LGALS9O00182 355 aa12.38□□□□□ -0.43
USP4-201ENST00000265560 F2Z2F3 143 aa12.37□□□□□ -0.43
USP4-201ENST00000265560 FOXA3P55318 350 aaPredicted RBP12.37□□□□□ -0.43
USP4-201ENST00000265560 KRTAP10-3P60369 221 aa12.37□□□□□ -0.43
USP4-201ENST00000265560 TMEM61Q8N0U2 210 aa12.37□□□□□ -0.43
USP4-201ENST00000265560 OR8A1Q8NGG7 326 aa12.37□□□□□ -0.43
USP4-201ENST00000265560 C9orf47Q6ZRZ4 202 aa12.37□□□□□ -0.43
USP4-201ENST00000265560 ZNF575Q86XF7 245 aa12.37□□□□□ -0.43
USP4-201ENST00000265560 OR4B1Q8NGF8 309 aa12.37□□□□□ -0.43
USP4-201ENST00000265560 TIMM8BQ9Y5J9 83 aaPredicted RBP12.36□□□□□ -0.43
USP4-201ENST00000265560 IFITM10A6NMD0 228 aa12.36□□□□□ -0.43
USP4-201ENST00000265560 M0QZ24 198 aa12.36□□□□□ -0.43
USP4-201ENST00000265560 TCF21O43680 179 aa12.36□□□□□ -0.43
USP4-201ENST00000265560 RBPMS2Q6ZRY4 209 aaKnown RBP12.36□□□□□ -0.43
USP4-201ENST00000265560 RBAKDNA6NC62 111 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 FABP5P3A8MUU1 101 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 RNASE4P34096 147 aaKnown RBP12.35□□□□□ -0.43
USP4-201ENST00000265560 LYZL1Q6UWQ5 148 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 TMEM256Q8N2U0 113 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 C16orf95Q9H693 158 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 CSN3P07498 182 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 PROK1P58294 105 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 NUPR1O60356 82 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 CD300EQ496F6 205 aaPredicted RBP12.35□□□□□ -0.43
USP4-201ENST00000265560 DYNLRB2Q8TF09 96 aa12.35□□□□□ -0.43
USP4-201ENST00000265560 TSSC4Q9Y5U2 329 aaPredicted RBP12.35□□□□□ -0.43
USP4-201ENST00000265560 IGKV3D-20A0A0C4DH25 116 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 GPX1P07203 203 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 ID1P41134 155 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 MRPL53Q96EL3 112 aaKnown RBP12.34□□□□□ -0.43
USP4-201ENST00000265560 FBN1P35555 2871 aaKnown RBP12.34□□□□□ -0.43
USP4-201ENST00000265560 TRAV12-2A0A075B6T6 113 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 TRAV9-1A0A075B6T8 112 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 K7EQG2 157 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 FXYD7P58549 80 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 GNB1LQ9BYB4 327 aa12.34□□□□□ -0.43
USP4-201ENST00000265560 M0R2Z0 102 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 ARL6IP6Q8N6S5 226 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 MSRB1Q9NZV6 116 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 NBEAL2Q6ZNJ1 2754 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 KNCNA6PVL3 124 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 UBE2CO00762 179 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 OVOL1O14753 267 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 SRIP30626 198 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 BMI1P35226 326 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 CT83Q5H943 113 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 ZFAND2AQ8N6M9 145 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 PEMTQ9UBM1 199 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 COL6A5A8TX70 2615 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 APCSP02743 223 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 HOXA5P20719 270 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 SNRPD3P62318 126 aaKnown RBP12.33□□□□□ -0.44
USP4-201ENST00000265560 JMJD8Q96S16 334 aa12.33□□□□□ -0.44
USP4-201ENST00000265560 DEFB131AP59861 70 aa12.32□□□□□ -0.44
USP4-201ENST00000265560 APRG1Q8IVJ8 170 aa12.32□□□□□ -0.44
USP4-201ENST00000265560 CRLF1O75462 422 aa12.32□□□□□ -0.44
USP4-201ENST00000265560 FABP4P15090 132 aa12.32□□□□□ -0.44
USP4-201ENST00000265560 HBBP68871 147 aa12.32□□□□□ -0.44
USP4-201ENST00000265560 LINC00477Q96M19 166 aa12.31□□□□□ -0.44
USP4-201ENST00000265560 A0A1B0GXF2 115 aa12.31□□□□□ -0.44
USP4-201ENST00000265560 ADARB2-AS1A8MUL3 147 aa12.31□□□□□ -0.44
USP4-201ENST00000265560 CRISP2P16562 243 aa12.31□□□□□ -0.44
USP4-201ENST00000265560 IQCJQ1A5X6 159 aa12.31□□□□□ -0.44
USP4-201ENST00000265560 A0A1B0GUT8 65 aa12.31□□□□□ -0.44
USP4-201ENST00000265560 DEFB114Q30KQ6 69 aa12.31□□□□□ -0.44
USP4-201ENST00000265560 PAFAH1B2P68402 229 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 SPINK13Q1W4C9 94 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 WDR73Q6P4I2 378 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 HIST3H2BBQ8N257 126 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 GFRA4Q9GZZ7 299 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 PPP1R14DQ9NXH3 145 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 TP53TG3Q9ULZ0 132 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 TRAV12-3A0A0B4J271 114 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 FBLL1A6NHQ2 334 aaKnown RBP12.3□□□□□ -0.44
USP4-201ENST00000265560 COX8CQ7Z4L0 72 aa12.3□□□□□ -0.44
USP4-201ENST00000265560 FHL3Q13643 280 aa12.29□□□□□ -0.44
USP4-201ENST00000265560 FER1L6-AS1Q8NA97 138 aa12.29□□□□□ -0.44
USP4-201ENST00000265560 HLA-DQA1P01909 254 aa12.29□□□□□ -0.44
USP4-201ENST00000265560 TWIST1Q15672 202 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms