RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 PRR20CP86479 221 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 PRR20DP86480 221 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 PRR20BP86481 221 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 PRR20AP86496 221 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 DEFB113Q30KQ7 82 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 LCNL1Q6ZST4 164 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 UBE2DNLQ8IWF7 75 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 TSPAN13O95857 204 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 IGLC1P0CG04 106 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 PLAURQ03405 335 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 MUC7Q8TAX7 377 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 PRR25Q96S07 402 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 TNRC6BQ9UPQ9 1833 aaKnown RBP3.44□□□□□ -1.86
VPS13C-202ENST00000261517 COL8A2P25067 703 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 ATP6V0E1O15342 81 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 GAGE13Q4V321 117 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 STPG4Q8N801 248 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 SMIM2Q9BVW6 85 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 JPT2Q9H910 190 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 IGKV1-6A0A0C4DH72 117 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 FOXA3P55318 350 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-202ENST00000261517 GNG5P63218 68 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 LOXL1Q08397 574 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-202ENST00000261517 LY6DQ14210 128 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 COA6Q5JTJ3 125 aaKnown RBP3.44□□□□□ -1.86
VPS13C-202ENST00000261517 SAMD5Q5TGI4 173 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 HS3ST6Q96QI5 342 aa3.44□□□□□ -1.86
VPS13C-202ENST00000261517 SRSF6Q13247 344 aaKnown RBP3.43□□□□□ -1.86
VPS13C-202ENST00000261517 Q6ZWC4 215 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 POLQO75417 2590 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 A0A1B0GWB2 263 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 ACYP1P07311 99 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 ZNF479Q96JC4 524 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 SMIM9A6NGZ8 99 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 NDUFA3O95167 84 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 IGHV3-11P01762 117 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 GCSAMLQ5JQS6 135 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 PLXNB1O43157 2135 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 ADAMTS20P59510 1910 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 HLA-DRB4P13762 266 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 C14orf177Q52M58 125 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 HLA-DRB4X5D2U9 266 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 JMJD1CQ15652 2540 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 TRGV1A0A0A0MS02 117 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 KIAA1644Q3SXP7 199 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 VOPP1Q96AW1 172 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 IGLC7A0M8Q6 106 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 GUSBP1Q15486 140 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 C4orf3Q8WVX3 66 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 GPHA2Q96T91 129 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 TRAV8-4A0A0B4J246 113 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 GATA2P23769 480 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-202ENST00000261517 DAD1P61803 113 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 PIK3CD-AS1Q5SR53 167 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 KLK15Q9H2R5 256 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 WISP1O95388 367 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 HOXD3P31249 432 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-202ENST00000261517 Q6ZR03 302 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 F8VRH5 84 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 PGPEP1Q9NXJ5 209 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 FN1P02751 2386 aaKnown RBP3.43□□□□□ -1.86
VPS13C-202ENST00000261517 PRSS33Q8NF86 280 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 FXYD5Q96DB9 178 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 LAMA1P25391 3075 aa3.43□□□□□ -1.86
VPS13C-202ENST00000261517 IGKV2-40A0A087WW87 121 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-202ENST00000261517 F8W1H4 67 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 LGALS9O00182 355 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 IGKV2D-40P01614 121 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-202ENST00000261517 C9orf47Q6ZRZ4 202 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 C10orf105Q8TEF2 133 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 TM2D2Q9BX73 214 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 ZNF580Q9UK33 172 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 TRBV10-1A0A0K0K1A3 114 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 IGKV1-16P04430 117 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 ZNF876PQ49A33 203 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 WDFY4Q6ZS81 3184 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 ZFP2Q6ZN57 461 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 PDE6GP18545 87 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 DPH3Q96FX2 82 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 COX11Q9Y6N1 276 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 DOPEY1Q5JWR5 2465 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 C9JQL5 133 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 TCTEX1D4Q5JR98 221 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 ATOH7Q8N100 152 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 PRO3102Q9H379 93 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 ESDP10768 282 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 HLA-DMBP28068 263 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 GAGE1Q13065 139 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 C6orf226Q5I0X4 101 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 LYPD2Q6UXB3 125 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 LHFPL4Q7Z7J7 247 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 ANKRD17O75179 2603 aaKnown RBP3.42□□□□□ -1.86
VPS13C-202ENST00000261517 IGLV11-55A0A075B6I3 123 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 BVES-AS1Q5T3Y7 98 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 EXOC3-AS1Q8N2X6 119 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 WDR86Q86TI4 376 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 CST9LQ9H4G1 147 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 CENPVL3A0A0U1RRI6 287 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 LOC105371267A0A1B0GV96 52 aa3.42□□□□□ -1.86
VPS13C-202ENST00000261517 RSPO1Q2MKA7 263 aaPredicted RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms