RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 ZNF785A8K8V0 405 aa9.78□□□□□ -0.84
HIF3A-201ENST00000244302 LINC01619G3V211 115 aa9.78□□□□□ -0.84
HIF3A-201ENST00000244302 CD33P20138 364 aa9.78□□□□□ -0.84
HIF3A-201ENST00000244302 CTRLP40313 264 aa9.78□□□□□ -0.84
HIF3A-201ENST00000244302 TCL1AP56279 114 aa9.78□□□□□ -0.84
HIF3A-201ENST00000244302 MRPL54Q6P161 138 aaKnown RBP9.78□□□□□ -0.84
HIF3A-201ENST00000244302 SPATA3Q8NHX4 192 aa9.78□□□□□ -0.84
HIF3A-201ENST00000244302 SMPXQ9UHP9 88 aa9.78□□□□□ -0.84
HIF3A-201ENST00000244302 TRAV8-1A0A0A6YYK1 113 aa9.77□□□□□ -0.84
HIF3A-201ENST00000244302 RPL11P62913 178 aaKnown RBP9.77□□□□□ -0.84
HIF3A-201ENST00000244302 TDRG1Q3Y452 100 aa9.77□□□□□ -0.84
HIF3A-201ENST00000244302 FAM162BQ5T6X4 162 aa9.77□□□□□ -0.84
HIF3A-201ENST00000244302 DPF1Q92782 380 aa9.77□□□□□ -0.84
HIF3A-201ENST00000244302 SPINK4O60575 86 aa9.77□□□□□ -0.85
HIF3A-201ENST00000244302 SLC25A5P05141 298 aaKnown RBP9.77□□□□□ -0.85
HIF3A-201ENST00000244302 RPL7P18124 248 aaKnown RBP9.77□□□□□ -0.85
HIF3A-201ENST00000244302 UQCR10Q9UDW1 63 aa9.77□□□□□ -0.85
HIF3A-201ENST00000244302 TRAV8-2A0A0B4J237 113 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 PRAC2D3DTV9 90 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 CCL24O00175 119 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 PMCHP20382 165 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 PMCHL1Q16048 86 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 KIAA1644Q3SXP7 199 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 WFDC3Q8IUB2 231 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 TSKUQ8WUA8 353 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 BORCS7Q96B45 105 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 RCHY1Q96PM5 261 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 TSSC4Q9Y5U2 329 aaPredicted RBP9.76□□□□□ -0.85
HIF3A-201ENST00000244302 C20orf202A1L168 122 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 C2orf70A6NJV1 201 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 DLEU1O43261 78 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 ZNF25P17030 456 aaPredicted RBP9.76□□□□□ -0.85
HIF3A-201ENST00000244302 TFPI2P48307 235 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 KRTAP24-1Q3LI83 254 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 SPATA45Q537H7 98 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 CT83Q5H943 113 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 COL5A1-AS1Q5SY13 56 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 NIT1Q86X76 327 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 C18orf32Q8TCD1 76 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 C20orf173Q96LM9 149 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 EPDR1Q9UM22 224 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 KLF12Q9Y4X4 402 aa9.76□□□□□ -0.85
HIF3A-201ENST00000244302 UBE2G1P62253 170 aa9.75□□□□□ -0.85
HIF3A-201ENST00000244302 NUP35Q8NFH5 326 aa9.75□□□□□ -0.85
HIF3A-201ENST00000244302 NUDT10Q8NFP7 164 aa9.75□□□□□ -0.85
HIF3A-201ENST00000244302 NUDT11Q96G61 164 aa9.75□□□□□ -0.85
HIF3A-201ENST00000244302 CMYA5Q8N3K9 4069 aa9.75□□□□□ -0.85
HIF3A-201ENST00000244302 C3orf79P0CE67 100 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 G0S2P27469 103 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 SLAQ13239 276 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 GOLT1AQ6ZVE7 132 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 K7EMT4 169 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 LINC00614P0C842 121 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 TCF24Q7RTU0 167 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 WFDC12Q8WWY7 111 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 TMEM208Q9BTX3 173 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 UFC1Q9Y3C8 167 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 PKD1L1Q8TDX9 2849 aa9.74□□□□□ -0.85
HIF3A-201ENST00000244302 IGKV2-40A0A087WW87 121 aaPredicted RBP9.73□□□□□ -0.85
HIF3A-201ENST00000244302 A0A1B0GXF2 115 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 CA1P00915 261 aaPredicted RBP9.73□□□□□ -0.85
HIF3A-201ENST00000244302 IGKV2D-40P01614 121 aaPredicted RBP9.73□□□□□ -0.85
HIF3A-201ENST00000244302 TCRAP04437 139 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 FHL3Q13643 280 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 OR9G4Q8NGQ1 327 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 FMC1Q96HJ9 113 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 GPR82Q96P67 336 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 OTORQ9NRC9 128 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 ZNF492Q9P255 531 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 LGALS9O00182 355 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 HSBP1O75506 76 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 CSN3P07498 182 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 IGLC3P0DOY3 106 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 PPP1R14DQ9NXH3 145 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 GOLT1BQ9Y3E0 138 aa9.73□□□□□ -0.85
HIF3A-201ENST00000244302 IGLV2-11P01706 119 aa9.72□□□□□ -0.85
HIF3A-201ENST00000244302 ERCC8Q13216 396 aa9.72□□□□□ -0.85
HIF3A-201ENST00000244302 DMRTA1Q5VZB9 504 aa9.72□□□□□ -0.85
HIF3A-201ENST00000244302 PRR27Q6MZM9 219 aa9.72□□□□□ -0.85
HIF3A-201ENST00000244302 C5orf17Q8NAS9 161 aa9.72□□□□□ -0.85
HIF3A-201ENST00000244302 VGLL1Q99990 258 aa9.72□□□□□ -0.85
HIF3A-201ENST00000244302 ALKBH7Q9BT30 221 aaPredicted RBP9.72□□□□□ -0.85
HIF3A-201ENST00000244302 GFRA4Q9GZZ7 299 aa9.72□□□□□ -0.85
HIF3A-201ENST00000244302 AGRNO00468 2067 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 FAM231BA6NCW3 169 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 HIGD1CA8MV81 97 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 A8MWL6 223 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 F6UB75 175 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 SOCS3O14543 225 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 LCN12Q6JVE5 192 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 S100A7AQ86SG5 101 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 MLST8Q9BVC4 326 aa9.71□□□□□ -0.85
HIF3A-201ENST00000244302 RPP21Q9H633 154 aaKnown RBP9.71□□□□□ -0.85
HIF3A-201ENST00000244302 A0A087X0K7 114 aa9.71□□□□□ -0.86
HIF3A-201ENST00000244302 NTF3P20783 257 aa9.71□□□□□ -0.86
HIF3A-201ENST00000244302 HNRNPA3P51991 378 aaKnown RBP9.71□□□□□ -0.86
HIF3A-201ENST00000244302 HBBP68871 147 aa9.71□□□□□ -0.86
HIF3A-201ENST00000244302 C16orf92Q96LL3 132 aa9.71□□□□□ -0.86
HIF3A-201ENST00000244302 MS4A6AQ9H2W1 248 aa9.71□□□□□ -0.86
HIF3A-201ENST00000244302 BTF3P20290 206 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms