RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 HILS1P60008 231 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 A0A1B0GW64 132 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 IGHV2-5P01817 119 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 IGFBP3P17936 291 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-217ENST00000637988 HERVK_113P63121 156 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 LINC00518Q8N0U6 118 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 PIP4P1Q86T03 277 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 RPP25LQ8N5L8 163 aaKnown RBP4.94□□□□□ -1.62
SCN1A-217ENST00000637988 ZNF625Q96I27 306 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-217ENST00000637988 LYZL4Q96KX0 146 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 NOTCH4Q99466 2003 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 TRAV13-2A0A0B4J235 113 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 LYPD3O95274 346 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 WISP3O95389 354 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-217ENST00000637988 IGKV1-39P01597 117 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 IGKV1D-39P04432 117 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 FUSP35637 526 aaKnown RBP eCLIP4.94□□□□□ -1.62
SCN1A-217ENST00000637988 Q8TCH9 128 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 F6UB75 175 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 ATP5G1P05496 136 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 C2orf82Q6UX34 121 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 TMEM75Q8N9X5 138 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 ZC2HC1AQ96GY0 325 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 FNDC10F2Z333 226 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 SNAI2O43623 268 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 TMEM170AQ8WVE7 144 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 UBL5Q9BZL1 73 aa4.94□□□□□ -1.62
SCN1A-217ENST00000637988 IGHV7-4-1A0A0J9YVY3 117 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 TGFBR3LH3BV60 316 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 DEFB112Q30KQ8 113 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 LYZL1Q6UWQ5 148 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 STPG4Q8N801 248 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 DEFB105AQ8NG35 78 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 C7orf33Q8WU49 177 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 B9D2Q9BPU9 175 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 C8orf86Q6ZUL3 223 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 RNF138Q8WVD3 245 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 PYGO2Q9BRQ0 406 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 hDV102S1A0JD36 115 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 CITED2Q99967 270 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-217ENST00000637988 RNF144BQ7Z419 303 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 C14orf144Q96I85 54 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 ATG2AQ2TAZ0 1938 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 PRRC2AP48634 2157 aaKnown RBP4.93□□□□□ -1.62
SCN1A-217ENST00000637988 CLPSL1A2RUU4 121 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 GAGE2AQ6NT46 116 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 LINC00114Q6XXX2 140 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 PLXNB1O43157 2135 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 KNCNA6PVL3 124 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 CD55P08174 381 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 HOXB4P17483 251 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-217ENST00000637988 UBE2D1P51668 147 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 WIPF2Q8TF74 440 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-217ENST00000637988 CAMK2N2Q96S95 79 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 NDUFAF3Q9BU61 184 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 PTPN13Q12923 2485 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 TRAV8-1A0A0A6YYK1 113 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 IGLV2-23P01705 113 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 HLA-DRB4P13762 266 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 XCL1P47992 114 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 PUSL1Q8N0Z8 303 aaKnown RBP4.93□□□□□ -1.62
SCN1A-217ENST00000637988 Q8TAT8 98 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 HLA-DRB4X5D2U9 266 aa4.93□□□□□ -1.62
SCN1A-217ENST00000637988 FAM19A2Q8N3H0 131 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 LDLRAD4O15165 306 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 YPEL3P61236 119 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-217ENST00000637988 SHISA2Q6UWI4 295 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 MRPL53Q96EL3 112 aaKnown RBP4.92□□□□□ -1.62
SCN1A-217ENST00000637988 RTBDNQ9BSG5 229 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-217ENST00000637988 GSN-AS1Q9NRJ2 163 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 PRR14LQ5THK1 2151 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 IGHV4-59P01825 116 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 C11orf45Q8TAV5 145 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 WFDC6Q9BQY6 131 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 EML5Q05BV3 1969 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 IGKV1D-17A0A075B6S4 117 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 GYPEP15421 78 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 SHANK2-AS3Q9BTD1 123 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 TRAV8-3A0A0A6YYJ7 113 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 MYCNOSP40205 109 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 C10orf55Q5SWW7 151 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 C9orf47Q6ZRZ4 202 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 C8orf49Q96NF6 230 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 SONP18583 2426 aaKnown RBP4.92□□□□□ -1.62
SCN1A-217ENST00000637988 TRAV12-2A0A075B6T6 113 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 UBE2CO00762 179 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 SPRY2O43597 315 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 Q6ZQT7 251 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 LINC01551Q86U37 167 aa4.92□□□□□ -1.62
SCN1A-217ENST00000637988 RBM38Q9H0Z9 239 aaKnown RBP4.92□□□□□ -1.62
SCN1A-217ENST00000637988 ARMS2P0C7Q2 107 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 C21orf62-AS1Q17RA5 79 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 ODF3L1Q8IXM7 274 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 RPRMLQ8N4K4 120 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 IGHG4P01861 327 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 Q0VG73 95 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 IGF2-ASQ6U949 168 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 DAZ2Q13117 558 aaKnown RBP4.91□□□□□ -1.62
SCN1A-217ENST00000637988 LHFPL4Q7Z7J7 247 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 DAZ4Q86SG3 579 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms