RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 S100PP25815 95 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 PRIMA1Q86XR5 153 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 WFDC3Q8IUB2 231 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 TMEM183AQ8IXX5 376 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 ZNF738Q8NE65 137 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 ANAPC16Q96DE5 110 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 SFRP2Q96HF1 295 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 SMCO4Q9NRQ5 59 aa13.84□□□□□ -0.19
CLN3-254ENST00000637050 MGST1P10620 155 aaKnown RBP13.83□□□□□ -0.2
CLN3-254ENST00000637050 PAFAH1B2P68402 229 aa13.83□□□□□ -0.2
CLN3-254ENST00000637050 TMEM61Q8N0U2 210 aa13.83□□□□□ -0.2
CLN3-254ENST00000637050 PPP1R14DQ9NXH3 145 aa13.83□□□□□ -0.2
CLN3-254ENST00000637050 TRAV2A0A0B4J234 112 aa13.82□□□□□ -0.2
CLN3-254ENST00000637050 TFPI2P48307 235 aa13.82□□□□□ -0.2
CLN3-254ENST00000637050 TUBA4BQ9H853 241 aa13.82□□□□□ -0.2
CLN3-254ENST00000637050 ERCC8Q13216 396 aa13.82□□□□□ -0.2
CLN3-254ENST00000637050 RBPMS2Q6ZRY4 209 aaKnown RBP13.82□□□□□ -0.2
CLN3-254ENST00000637050 C9orf47Q6ZRZ4 202 aa13.82□□□□□ -0.2
CLN3-254ENST00000637050 FAM24BQ8N5W8 94 aa13.82□□□□□ -0.2
CLN3-254ENST00000637050 PPP1R2P9O14990 202 aa13.81□□□□□ -0.2
CLN3-254ENST00000637050 PF4P02776 101 aa13.81□□□□□ -0.2
CLN3-254ENST00000637050 CD300EQ496F6 205 aaPredicted RBP13.81□□□□□ -0.2
CLN3-254ENST00000637050 OR10G8Q8NGN5 311 aa13.81□□□□□ -0.2
CLN3-254ENST00000637050 PRR25Q96S07 402 aa13.81□□□□□ -0.2
CLN3-254ENST00000637050 AGPAT4-IT1Q9H0P7 198 aa13.81□□□□□ -0.2
CLN3-254ENST00000637050 OSTCQ9NRP0 149 aa13.81□□□□□ -0.2
CLN3-254ENST00000637050 TRAV25A0A0B4J276 109 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 CXorf65A6NEN9 183 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 LINC00587B1AMM8 73 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 H7BYZ3 331 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 ERVFC1-1P60608 527 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 SNRPD3P62318 126 aaKnown RBP13.8□□□□□ -0.2
CLN3-254ENST00000637050 SAPCD1Q5SSQ6 148 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 COX8CQ7Z4L0 72 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 LINC00482Q8N8I6 264 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 ASCL2Q99929 193 aa13.8□□□□□ -0.2
CLN3-254ENST00000637050 TEP1Q99973 2627 aaKnown RBP13.8□□□□□ -0.2
CLN3-254ENST00000637050 JMJD1CQ15652 2540 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 FAM231DQ6ZW35 169 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 Q8TAT8 98 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 RNASE7Q9H1E1 156 aaKnown RBP13.79□□□□□ -0.2
CLN3-254ENST00000637050 NPIPB6E9PJ23 425 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 ZNF688P0C7X2 276 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 IBA57Q5T440 356 aaKnown RBP13.79□□□□□ -0.2
CLN3-254ENST00000637050 TMEM78Q5T7P6 136 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 C15orf54Q8N8G6 183 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 OR8A1Q8NGG7 326 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 OR10J6PQ8NGY7 276 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 ZC2HC1AQ96GY0 325 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 C8orf49Q96NF6 230 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 GPR61Q9BZJ8 451 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 ZNF492Q9P255 531 aa13.79□□□□□ -0.2
CLN3-254ENST00000637050 ZNF138P52744 262 aa13.78□□□□□ -0.2
CLN3-254ENST00000637050 DEFB1P60022 68 aa13.78□□□□□ -0.2
CLN3-254ENST00000637050 PSMG4Q5JS54 123 aa13.78□□□□□ -0.2
CLN3-254ENST00000637050 PRR27Q6MZM9 219 aa13.78□□□□□ -0.2
CLN3-254ENST00000637050 LINC00322Q6ZN03 302 aaPredicted RBP13.78□□□□□ -0.2
CLN3-254ENST00000637050 SPAG8Q99932 426 aaPredicted RBP13.78□□□□□ -0.2
CLN3-254ENST00000637050 V9GYV3 84 aa13.78□□□□□ -0.2
CLN3-254ENST00000637050 MAST4O15021 2626 aa13.78□□□□□ -0.2
CLN3-254ENST00000637050 SAP30O75446 220 aa13.77□□□□□ -0.21
CLN3-254ENST00000637050 ZNF705DP0CH99 300 aaPredicted RBP13.77□□□□□ -0.21
CLN3-254ENST00000637050 ZNF705BP0CI00 300 aaPredicted RBP13.77□□□□□ -0.21
CLN3-254ENST00000637050 LINC00477Q96M19 166 aa13.77□□□□□ -0.21
CLN3-254ENST00000637050 YPEL4Q96NS1 127 aa13.77□□□□□ -0.21
CLN3-254ENST00000637050 NDFIP1Q9BT67 221 aa13.77□□□□□ -0.21
CLN3-254ENST00000637050 C19orf71A6NCJ1 209 aa13.76□□□□□ -0.21
CLN3-254ENST00000637050 IZUMO1RA6ND01 250 aa13.76□□□□□ -0.21
CLN3-254ENST00000637050 F6UB75 175 aa13.76□□□□□ -0.21
CLN3-254ENST00000637050 NUDT10Q8NFP7 164 aa13.76□□□□□ -0.21
CLN3-254ENST00000637050 NUDT11Q96G61 164 aa13.76□□□□□ -0.21
CLN3-254ENST00000637050 IGLV1-51P01701 117 aa13.75□□□□□ -0.21
CLN3-254ENST00000637050 HIST1H1AQ02539 215 aaPredicted RBP13.75□□□□□ -0.21
CLN3-254ENST00000637050 GSN-AS1Q9NRJ2 163 aa13.75□□□□□ -0.21
CLN3-254ENST00000637050 ZNF256Q9Y2P7 627 aaPredicted RBP13.75□□□□□ -0.21
CLN3-254ENST00000637050 LENEPQ9Y5L5 61 aa13.75□□□□□ -0.21
CLN3-254ENST00000637050 OR4C46A6NHA9 309 aa13.75□□□□□ -0.21
CLN3-254ENST00000637050 CRIP1P50238 77 aa13.75□□□□□ -0.21
CLN3-254ENST00000637050 IMMP2LQ96T52 175 aa13.75□□□□□ -0.21
CLN3-254ENST00000637050 ZNF747Q9BV97 191 aa13.75□□□□□ -0.21
CLN3-254ENST00000637050 COLCA2A8K830 154 aa13.74□□□□□ -0.21
CLN3-254ENST00000637050 PFN1P07737 140 aaKnown RBP13.74□□□□□ -0.21
CLN3-254ENST00000637050 CT45A10P0DMU9 189 aa13.74□□□□□ -0.21
CLN3-254ENST00000637050 ELOBQ15370 118 aa13.74□□□□□ -0.21
CLN3-254ENST00000637050 ZNF124Q15973 351 aa13.74□□□□□ -0.21
CLN3-254ENST00000637050 OR2K2Q8NGT1 345 aa13.74□□□□□ -0.21
CLN3-254ENST00000637050 URGCP-MRPS24S4R325 110 aa13.74□□□□□ -0.21
CLN3-254ENST00000637050 A0A0J9YX75 114 aa13.73□□□□□ -0.21
CLN3-254ENST00000637050 ZNF705GA8MUZ8 300 aaPredicted RBP13.73□□□□□ -0.21
CLN3-254ENST00000637050 GDF5OSQ5U4N7 250 aa13.73□□□□□ -0.21
CLN3-254ENST00000637050 DAZAP1Q96EP5 407 aaKnown RBP13.73□□□□□ -0.21
CLN3-254ENST00000637050 WNK1Q9H4A3 2382 aa13.73□□□□□ -0.21
CLN3-254ENST00000637050 FAM19A4Q96LR4 140 aa13.72□□□□□ -0.21
CLN3-254ENST00000637050 IL36BQ9NZH7 164 aa13.72□□□□□ -0.21
CLN3-254ENST00000637050 TRBV7-9A0A0J9YWB2 115 aa13.72□□□□□ -0.21
CLN3-254ENST00000637050 P01737 135 aa13.72□□□□□ -0.21
CLN3-254ENST00000637050 ZNF80P51504 273 aaPredicted RBP13.72□□□□□ -0.21
CLN3-254ENST00000637050 RAB5BP61020 215 aa13.72□□□□□ -0.21
CLN3-254ENST00000637050 FAM162BQ5T6X4 162 aa13.72□□□□□ -0.21
CLN3-254ENST00000637050 FOXI2Q6ZQN5 318 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms