RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 C16orf54Q6UWD8 224 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 HSPB8Q9UJY1 196 aa11.4□□□□□ -0.58
SHROOM1-208ENST00000617339 A8MWL6 223 aa11.4□□□□□ -0.59
SHROOM1-208ENST00000617339 SCGB2A1O75556 95 aa11.4□□□□□ -0.59
SHROOM1-208ENST00000617339 COX8AP10176 69 aa11.4□□□□□ -0.59
SHROOM1-208ENST00000617339 SAA4P35542 130 aa11.4□□□□□ -0.59
SHROOM1-208ENST00000617339 LINC00311Q8N616 119 aa11.4□□□□□ -0.59
SHROOM1-208ENST00000617339 HIF1ANQ9NWT6 349 aa11.4□□□□□ -0.59
SHROOM1-208ENST00000617339 G3V318 75 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 NDPQ00604 133 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 FAM162BQ5T6X4 162 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 PET117Q6UWS5 81 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 CHCHD1Q96BP2 118 aaKnown RBP11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 A0A1B0GXF2 115 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 K7EMI3 77 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 NDUFS8O00217 210 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 FAM106AQ4KMX7 169 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 FA2HQ7L5A8 372 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 HIGD1AQ9Y241 93 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 SERTM2A0A1B0GWG4 89 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 TEX22C9J3V5 150 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 TMEM30BQ3MIR4 351 aa11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 CIARTQ8N365 385 aaPredicted RBP11.39□□□□□ -0.59
SHROOM1-208ENST00000617339 A6NDN8 102 aa11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 C9orf118A6NHY6 69 aa11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 CRXO43186 299 aaPredicted RBP11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 FAM231DQ6ZW35 169 aa11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 C11orf44Q8N8P7 122 aa11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 CHTOPQ9Y3Y2 248 aaKnown RBP11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 TEX15Q9BXT5 2789 aa11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 RNF223E7ERA6 249 aa11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 EPDR1Q9UM22 224 aa11.38□□□□□ -0.59
SHROOM1-208ENST00000617339 LCNL1Q6ZST4 164 aa11.37□□□□□ -0.59
SHROOM1-208ENST00000617339 AP5S1Q9NUS5 200 aa11.37□□□□□ -0.59
SHROOM1-208ENST00000617339 MS4A6AQ9H2W1 248 aa11.37□□□□□ -0.59
SHROOM1-208ENST00000617339 K7EP34 96 aa11.37□□□□□ -0.59
SHROOM1-208ENST00000617339 FXYD5Q96DB9 178 aa11.37□□□□□ -0.59
SHROOM1-208ENST00000617339 Q9H3A6 140 aa11.37□□□□□ -0.59
SHROOM1-208ENST00000617339 IGHV4-61A0A0C4DH41 118 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 FCER1GP30273 86 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 SEC11AP67812 179 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 ATP5L2Q7Z4Y8 100 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 ARPC1AQ92747 370 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 GPR82Q96P67 336 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 IGHV4-39P01824 125 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 LOXL1Q08397 574 aaPredicted RBP11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 TEX48A0A1B0GUV7 120 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 AZU1P20160 251 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 PRTN3P24158 256 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 CACNG7P62955 275 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 UFSP1Q6NVU6 142 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 RBPMS2Q6ZRY4 209 aaKnown RBP11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 MTURNQ8N3F0 131 aa11.36□□□□□ -0.59
SHROOM1-208ENST00000617339 CLEC3BP05452 202 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 GCSHP23434 173 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 C5orf64Q2M2E5 130 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 MRPL32Q9BYC8 188 aaKnown RBP11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 SLC25A39Q9BZJ4 359 aaPredicted RBP11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 NF1P21359 2839 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 IGKV1-17P01599 117 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 PCP2Q8IVA1 136 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 IGHV4-30-2A0A087WSY4 118 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 BMI1P35226 326 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 FBXL19-AS1Q494R0 122 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 TTTY13Q9BZ97 58 aa11.35□□□□□ -0.59
SHROOM1-208ENST00000617339 H3BUX3 64 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 K7ERJ3 54 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 ARMS2P0C7Q2 107 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 LINC01545Q5VT33 79 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 CLEC19AQ6UXS0 136 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 H3BRM9 83 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 IFI27P40305 119 aaPredicted RBP11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 ZNF747Q9BV97 191 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 NPFFR1Q9GZQ6 430 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 A0A1B0GV72 72 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 FNDC10F2Z333 226 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 HLA-DMBP28068 263 aa11.34□□□□□ -0.59
SHROOM1-208ENST00000617339 CSN1S1P47710 185 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 IL17RELQ6ZVW7 336 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 C19orf24Q9BVV8 132 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 FABP2P12104 132 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 BBC3Q96PG8 261 aaPredicted RBP11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 K7EIM0 57 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 HAX1O00165 279 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 SCGB2A2Q13296 93 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 C11orf71Q6IPW1 123 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 C18orf15Q96N68 181 aa11.33□□□□□ -0.6
SHROOM1-208ENST00000617339 PSMB11A5LHX3 300 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 TNFRSF14Q92956 283 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 HOXB4P17483 251 aaPredicted RBP11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 PIP4P2Q8N4L2 257 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 RNF125Q96EQ8 232 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 A0A1W2PPM0 123 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 I3L2K1 104 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 C8orf46Q8TAG6 207 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 Q8TAT8 98 aa11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 TSSC4Q9Y5U2 329 aaPredicted RBP11.32□□□□□ -0.6
SHROOM1-208ENST00000617339 FBN2P35556 2912 aa11.31□□□□□ -0.6
SHROOM1-208ENST00000617339 TRGV3P03979 118 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms