RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 FAM74A7A6NL05 159 aa14.04□□□□□ -0.16
UPF1-209ENST00000600310 ZNF705AQ6ZN79 300 aaPredicted RBP14.04□□□□□ -0.16
UPF1-209ENST00000600310 FAM19A4Q96LR4 140 aa14.04□□□□□ -0.16
UPF1-209ENST00000600310 NKX6-2Q9C056 277 aaPredicted RBP14.04□□□□□ -0.16
UPF1-209ENST00000600310 LEPP41159 167 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 UBE2G2P60604 165 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 GNG5P63218 68 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 TMEM78Q5T7P6 136 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 ALKAL2Q6UX46 152 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 C1orf158Q8N1D5 194 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 ZNF492Q9P255 531 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 RPH3ALQ9UNE2 315 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 GOLT1BQ9Y3E0 138 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 ARL2-SNX15V9GYD0 113 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 X6R8D5 127 aa14.03□□□□□ -0.16
UPF1-209ENST00000600310 TRAV12-2A0A075B6T6 113 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 A0A1B0GV50 99 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 SERTM2A0A1B0GWG4 89 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 INSP01308 110 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 TCRAP04437 139 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 ZNF138P52744 262 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 GOLT1AQ6ZVE7 132 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 EDA2RQ9HAV5 297 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 EPDR1Q9UM22 224 aa14.02□□□□□ -0.17
UPF1-209ENST00000600310 TRBV7-9A0A0J9YWB2 115 aa14.01□□□□□ -0.17
UPF1-209ENST00000600310 TEX46H3BTG2 121 aa14.01□□□□□ -0.17
UPF1-209ENST00000600310 HBE1P02100 147 aa14.01□□□□□ -0.17
UPF1-209ENST00000600310 CRISP2P16562 243 aa14.01□□□□□ -0.17
UPF1-209ENST00000600310 PPT1P50897 306 aa14.01□□□□□ -0.17
UPF1-209ENST00000600310 NEU1Q99519 415 aa14.01□□□□□ -0.17
UPF1-209ENST00000600310 NMBP08949 121 aa14□□□□□ -0.17
UPF1-209ENST00000600310 KIR3DS1Q14943 382 aa14□□□□□ -0.17
UPF1-209ENST00000600310 LENEPQ9Y5L5 61 aa14□□□□□ -0.17
UPF1-209ENST00000600310 IGHV3OR16-12A0A075B7B8 117 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 SMIM9A6NGZ8 99 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 KLLNB2CW77 178 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 PAGE4O60829 102 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 IFNA7P01567 189 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 RBMY1A1P0DJD3 496 aaKnown RBP13.99□□□□□ -0.17
UPF1-209ENST00000600310 RBMY1CP0DJD4 496 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 MIFP14174 115 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 CCL20P78556 96 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 RBMY1FQ15415 496 aaKnown RBP13.99□□□□□ -0.17
UPF1-209ENST00000600310 GFI1BQ5VTD9 330 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 CST9LP1Q5W188 147 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 CCDC28AQ8IWP9 274 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 ZFAND2AQ8N6M9 145 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 Q8NAQ8 132 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 Q8TAT8 98 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 WWC2-AS2Q96NR7 200 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 C20orf144Q9BQM9 153 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 ATG101Q9BSB4 218 aa13.99□□□□□ -0.17
UPF1-209ENST00000600310 K7EQM0 130 aa13.98□□□□□ -0.17
UPF1-209ENST00000600310 TMEM256Q8N2U0 113 aa13.98□□□□□ -0.17
UPF1-209ENST00000600310 CYB561D1Q8N8Q1 229 aa13.98□□□□□ -0.17
UPF1-209ENST00000600310 TCEAL7Q9BRU2 100 aa13.98□□□□□ -0.17
UPF1-209ENST00000600310 TMEM208Q9BTX3 173 aa13.98□□□□□ -0.17
UPF1-209ENST00000600310 TRAV8-1A0A0A6YYK1 113 aa13.97□□□□□ -0.17
UPF1-209ENST00000600310 IGHV4-28A0A0C4DH34 117 aa13.97□□□□□ -0.17
UPF1-209ENST00000600310 A0A0J9YWU9 116 aa13.97□□□□□ -0.17
UPF1-209ENST00000600310 J3KRW8 73 aa13.97□□□□□ -0.17
UPF1-209ENST00000600310 ATP5G3P48201 142 aa13.97□□□□□ -0.17
UPF1-209ENST00000600310 HIST1H2BAQ96A08 127 aa13.97□□□□□ -0.17
UPF1-209ENST00000600310 C11orf68Q9H3H3 251 aaKnown RBP13.97□□□□□ -0.17
UPF1-209ENST00000600310 C7orf71A4D174 169 aa13.96□□□□□ -0.17
UPF1-209ENST00000600310 FBLL1A6NHQ2 334 aaKnown RBP13.96□□□□□ -0.17
UPF1-209ENST00000600310 PEX7O00628 323 aa13.96□□□□□ -0.17
UPF1-209ENST00000600310 BLOC1S1P78537 153 aa13.96□□□□□ -0.17
UPF1-209ENST00000600310 PMS2P11Q13670 270 aa13.96□□□□□ -0.17
UPF1-209ENST00000600310 LINC01587Q99440 93 aa13.96□□□□□ -0.17
UPF1-209ENST00000600310 MANBALQ9NQG1 85 aa13.96□□□□□ -0.17
UPF1-209ENST00000600310 GNG13Q9P2W3 67 aa13.96□□□□□ -0.17
UPF1-209ENST00000600310 TENM3Q9P273 2699 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 F6UZH7 168 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 H7BYZ3 331 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 IGLV2-11P01706 119 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 GPX1P07203 203 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 TMEM75Q8N9X5 138 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 SGK494Q96LW2 274 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 PSG8Q9UQ74 426 aa13.95□□□□□ -0.18
UPF1-209ENST00000600310 NBEAL2Q6ZNJ1 2754 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 TRAV12-3A0A0B4J271 114 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 DEFB4AO15263 64 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 RNASE4P34096 147 aaKnown RBP13.94□□□□□ -0.18
UPF1-209ENST00000600310 TAS2R60P59551 318 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 FLI1Q01543 452 aaPredicted RBP13.94□□□□□ -0.18
UPF1-209ENST00000600310 BTN1A1Q13410 526 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 RRN3P1Q2M238 152 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 PRR9Q5T870 116 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 TVP23CQ96ET8 276 aa13.94□□□□□ -0.18
UPF1-209ENST00000600310 COL7A1Q02388 2944 aa13.93□□□□□ -0.18
UPF1-209ENST00000600310 ZNF705GA8MUZ8 300 aaPredicted RBP13.93□□□□□ -0.18
UPF1-209ENST00000600310 ZNF324O75467 553 aaPredicted RBP13.93□□□□□ -0.18
UPF1-209ENST00000600310 TEX261Q6UWH6 196 aa13.93□□□□□ -0.18
UPF1-209ENST00000600310 LYPD6BQ8NI32 183 aa13.93□□□□□ -0.18
UPF1-209ENST00000600310 LINC00479Q96M42 142 aa13.93□□□□□ -0.18
UPF1-209ENST00000600310 NIPSNAP3BQ9BS92 247 aa13.93□□□□□ -0.18
UPF1-209ENST00000600310 TREM1Q9NP99 234 aa13.93□□□□□ -0.18
UPF1-209ENST00000600310 TRAV34A0A0B4J273 112 aa13.92□□□□□ -0.18
UPF1-209ENST00000600310 C11orf94C9JXX5 98 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms