RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GFI1BQ5VTD9 330 aa8.7□□□□□ -1.02
TRIM28-212ENST00000597995 MIR17HGQ75NE6 70 aa8.7□□□□□ -1.02
TRIM28-212ENST00000597995 SPATA12Q7Z6I5 190 aa8.7□□□□□ -1.02
TRIM28-212ENST00000597995 OR10J6PQ8NGY7 276 aa8.7□□□□□ -1.02
TRIM28-212ENST00000597995 RNASE8Q8TDE3 154 aaKnown RBP8.7□□□□□ -1.02
TRIM28-212ENST00000597995 C20orf144Q9BQM9 153 aa8.7□□□□□ -1.02
TRIM28-212ENST00000597995 WDR61Q9GZS3 305 aaKnown RBP8.7□□□□□ -1.02
TRIM28-212ENST00000597995 APOBP04114 4563 aaKnown RBP8.7□□□□□ -1.02
TRIM28-212ENST00000597995 A0A1W2PPQ1 181 aa8.69□□□□□ -1.02
TRIM28-212ENST00000597995 HIST1H1EP10412 219 aaKnown RBP8.69□□□□□ -1.02
TRIM28-212ENST00000597995 EXOC3-AS1Q8N2X6 119 aa8.69□□□□□ -1.02
TRIM28-212ENST00000597995 RXFP4Q8TDU9 374 aa8.69□□□□□ -1.02
TRIM28-212ENST00000597995 TMEM263Q8WUH6 116 aaKnown RBP8.69□□□□□ -1.02
TRIM28-212ENST00000597995 UPK3BQ9BT76 320 aa8.69□□□□□ -1.02
TRIM28-212ENST00000597995 Q9H3A6 140 aa8.69□□□□□ -1.02
TRIM28-212ENST00000597995 NOP10Q9NPE3 64 aaKnown RBP8.69□□□□□ -1.02
TRIM28-212ENST00000597995 SCRT2Q9NQ03 307 aa8.69□□□□□ -1.02
TRIM28-212ENST00000597995 DNAH5Q8TE73 4624 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 H3BNG1 76 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 H7BYZ3 331 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 SSNA1O43805 119 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 HTN1P15515 57 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 M6PRP20645 277 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 ERCC8Q13216 396 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 LINC00612Q8N6U2 182 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 GNPNAT1Q96EK6 184 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-212ENST00000597995 MRPL53Q96EL3 112 aaKnown RBP8.68□□□□□ -1.02
TRIM28-212ENST00000597995 FAM19A4Q96LR4 140 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 HSPB11Q9Y547 144 aa8.68□□□□□ -1.02
TRIM28-212ENST00000597995 TRAV26-1A0A087WT03 109 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 J3KRW8 73 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 OR5I1Q13606 314 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 PDE6HQ13956 83 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 BLNKQ8WV28 456 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 FXYD5Q96DB9 178 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 ODF3Q96PU9 254 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 ATP5SQ99766 215 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 KRTAP1-5Q9BYS1 174 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 AGPAT4-IT1Q9H0P7 198 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 WFDC1Q9HC57 220 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 MBD2Q9UBB5 411 aa8.67□□□□□ -1.02
TRIM28-212ENST00000597995 NBEAP1P0C6P0 100 aa8.66□□□□□ -1.02
TRIM28-212ENST00000597995 RPL12P30050 165 aaKnown RBP8.66□□□□□ -1.02
TRIM28-212ENST00000597995 CCDC28AQ8IWP9 274 aa8.66□□□□□ -1.02
TRIM28-212ENST00000597995 SMIM3Q9BZL3 60 aa8.66□□□□□ -1.02
TRIM28-212ENST00000597995 TIMM9Q9Y5J7 89 aa8.66□□□□□ -1.02
TRIM28-212ENST00000597995 ALG5Q9Y673 324 aa8.66□□□□□ -1.02
TRIM28-212ENST00000597995 TRAV12-3A0A0B4J271 114 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 KLLNB2CW77 178 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 EIF3GO75821 320 aaKnown RBP eCLIP8.65□□□□□ -1.02
TRIM28-212ENST00000597995 OR10J4P0C629 311 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 LEPP41159 167 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 KRTAP10-2P60368 255 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 CD300CQ08708 224 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 ICAM4Q14773 271 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 ESRGQ1W209 222 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 Q6ZQT7 251 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 PHYHIPLQ96FC7 376 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 VGLL1Q99990 258 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 MRPL32Q9BYC8 188 aaKnown RBP8.65□□□□□ -1.02
TRIM28-212ENST00000597995 OR51M1Q9H341 326 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 FUT9Q9Y231 359 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 PRELID1Q9Y255 219 aa8.65□□□□□ -1.02
TRIM28-212ENST00000597995 MRPS16Q9Y3D3 137 aaKnown RBP8.65□□□□□ -1.02
TRIM28-212ENST00000597995 IGKV2-40A0A087WW87 121 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-212ENST00000597995 ZNF324O75467 553 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-212ENST00000597995 IGKV2D-40P01614 121 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-212ENST00000597995 HOXA5P20719 270 aa8.64□□□□□ -1.03
TRIM28-212ENST00000597995 FFAR4Q5NUL3 377 aa8.64□□□□□ -1.03
TRIM28-212ENST00000597995 PRR9Q5T870 116 aa8.64□□□□□ -1.03
TRIM28-212ENST00000597995 FAM122CQ6P4D5 195 aa8.64□□□□□ -1.03
TRIM28-212ENST00000597995 C9orf47Q6ZRZ4 202 aa8.64□□□□□ -1.03
TRIM28-212ENST00000597995 LINC00477Q96M19 166 aa8.64□□□□□ -1.03
TRIM28-212ENST00000597995 PAXXQ9BUH6 204 aa8.64□□□□□ -1.03
TRIM28-212ENST00000597995 A0A0J9YY99 117 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 GAGE12BA1L429 117 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 SNURFLB1AK76 121 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 C17orf112F2Z3M2 114 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 GAGE7O76087 117 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 SLC25A5P05141 298 aaKnown RBP8.63□□□□□ -1.03
TRIM28-212ENST00000597995 GAGE12FP0CL80 117 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 GAGE12GP0CL81 117 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 GAGE12IP0CL82 117 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 PET100P0DJ07 73 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 CRISP2P16562 243 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 BTN1A1Q13410 526 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 ZFAND2AQ8N6M9 145 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 KCNIP2Q9NS61 270 aa8.63□□□□□ -1.03
TRIM28-212ENST00000597995 C7orf71A4D174 169 aa8.62□□□□□ -1.03
TRIM28-212ENST00000597995 DAZ2Q13117 558 aaKnown RBP8.62□□□□□ -1.03
TRIM28-212ENST00000597995 C11orf72Q8NBR9 251 aa8.62□□□□□ -1.03
TRIM28-212ENST00000597995 PYGO2Q9BRQ0 406 aa8.62□□□□□ -1.03
TRIM28-212ENST00000597995 AAMDCQ9H7C9 122 aa8.62□□□□□ -1.03
TRIM28-212ENST00000597995 PGPEP1Q9NXJ5 209 aa8.62□□□□□ -1.03
TRIM28-212ENST00000597995 OR7C2O60412 319 aa8.61□□□□□ -1.03
TRIM28-212ENST00000597995 PTTG1O95997 202 aa8.61□□□□□ -1.03
TRIM28-212ENST00000597995 IFNA5P01569 189 aa8.61□□□□□ -1.03
TRIM28-212ENST00000597995 RNASE4P34096 147 aaKnown RBP8.61□□□□□ -1.03
TRIM28-212ENST00000597995 RANP62826 216 aaKnown RBP8.61□□□□□ -1.03
TRIM28-212ENST00000597995 Q5BKY6 102 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms