RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MYLKQ15746 1914 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 LAMA4Q16363 1823 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 C3orf85A0A1B0GTC6 90 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 LOC107986453A0A1B0GWG9 222 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 ZNF727A8MUV8 499 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 IGHV3-30P01768 117 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 CD14P08571 375 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 IGHV3-30-5P0DP03 117 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 DNAJB13P59910 316 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 SAMD13Q5VXD3 122 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 IZUMO2Q6UXV1 221 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 ZCCHC23Q6ZST2 131 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 C10orf111Q8N326 155 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 TMEM229BQ8NBD8 167 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 CLEC2BQ92478 149 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 ALPK3Q96L96 1907 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 CNTRLQ7Z7A1 2325 aa0.75□□□□□ -2.29
SMCHD1-209ENST00000583441 PLXNA4Q9HCM2 1894 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 TRBV30A0A0K0K1B3 111 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 ARL5CA6NH57 179 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 SULT1C4O75897 302 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 S100GP29377 79 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 FOXA3P55318 350 aaPredicted RBP0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 NEDD8Q15843 81 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 SPINK9Q5DT21 86 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 HRCT1Q6UXD1 115 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 Q6ZQY7 126 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 MORN4Q8NDC4 146 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 MPC1Q9Y5U8 109 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 MED12Q93074 2177 aa0.74□□□□□ -2.29
SMCHD1-209ENST00000583441 SIP14410 1827 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 HEATR1Q9H583 2144 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 BBIP1A8MTZ0 92 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 TSTD3H0UI37 97 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 TEX29Q8N6K0 151 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 TCTEX1D1Q8N7M0 179 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 TMEM35BQ8NCS4 154 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 NABP2Q9BQ15 211 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 C19orf12Q9NSK7 152 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 TRAPPC2LQ9UL33 140 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 NOTCH1P46531 2555 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 NUP210LQ5VU65 1888 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 A2MP01023 1474 aa0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 MYO18AQ92614 2054 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-209ENST00000583441 UNC13CQ8NB66 2214 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 MYH2Q9UKX2 1941 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 PRORSD1PA6NEY8 169 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 IFITM5A6NNB3 132 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 K7EIL1 84 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 SNRNP200O75643 2136 aaKnown RBP0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 GYPBP06028 91 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 RPL7P18124 248 aaKnown RBP0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 CRYGSP22914 178 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 RPL22P35268 128 aaKnown RBP0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 ETV6P41212 452 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 FXYD6P3P58550 94 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 RPS28P62857 69 aaKnown RBP0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 NAT14Q8WUY8 206 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 CCDC115Q96NT0 180 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 NIT2Q9NQR4 276 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 SPANXA1Q9NS26 97 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 CBLN4Q9NTU7 201 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 SPANXCQ9NY87 97 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 HSPB11Q9Y547 144 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 FBN2P35556 2912 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 DLC1Q96QB1 1528 aa0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 TCOF1Q13428 1488 aaKnown RBP0.72□□□□□ -2.29
SMCHD1-209ENST00000583441 N4BP2Q86UW6 1770 aaPredicted RBP0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 CASP8AP2Q9UKL3 1982 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 LOC107984640A0A0U1RRK4 108 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 A0A1W2PPB8 328 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 A0A1W2PRS3 328 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 KIR3DP1A8MWS1 328 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 ASB16-AS1Q495Z4 193 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 C3orf62Q6ZUJ4 267 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 OR5A2Q8NGI9 324 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 LIMD2Q9BT23 127 aa0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 PHRF1Q9P1Y6 1649 aaKnown RBP0.71□□□□□ -2.3
SMCHD1-209ENST00000583441 EML5Q05BV3 1969 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 GNG14A0A1W2PPG7 69 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 PRB4P10163 310 aaPredicted RBP0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 SLC25A4P12235 298 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 CCL4P13236 92 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 RPL37AP61513 92 aaKnown RBP0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 B2MP61769 119 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 BLCAPP62952 87 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 SPATA8Q6RVD6 105 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 Q6ZS92 163 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 OR51A4Q8NGJ6 313 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 LPAR5Q9H1C0 372 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 FKBP11Q9NYL4 201 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 PTPRFP10586 1907 aa0.7□□□□□ -2.3
SMCHD1-209ENST00000583441 LOC107984156A0A0G2JMH3 177 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 H0YJX3 145 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 UQCRQO14949 82 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 HBDP02042 147 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 RPS3P23396 243 aaKnown RBP eCLIP0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 GTF2A1P52655 376 aaPredicted RBP0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 ARL17AQ8IVW1 177 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms