RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ZNF492Q9P255 531 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 ARL2-SNX15V9GYD0 113 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 X6R8D5 127 aa6.94□□□□□ -1.3
CCDC40-214ENST00000575431 A0A0J9YWU9 116 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 M0R2Z0 102 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 CRXO43186 299 aaPredicted RBP6.93□□□□□ -1.3
CCDC40-214ENST00000575431 HBE1P02100 147 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 H2AFB1P0C5Y9 115 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 CT45A10P0DMU9 189 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 CRISP2P16562 243 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 SULT1A2P50226 295 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 PPT1P50897 306 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 SUMO1P63165 101 aaKnown RBP6.93□□□□□ -1.3
CCDC40-214ENST00000575431 RRN3P1Q2M238 152 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 SSX7Q7RTT5 188 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 C1orf158Q8N1D5 194 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 MUC7Q8TAX7 377 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 SFT2D1Q8WV19 159 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 FAM19A4Q96LR4 140 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 TCEAL7Q9BRU2 100 aa6.93□□□□□ -1.3
CCDC40-214ENST00000575431 IGHV3OR16-12A0A075B7B8 117 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 IGKV2-40A0A087WW87 121 aaPredicted RBP6.92□□□□□ -1.3
CCDC40-214ENST00000575431 TRAV1-1A0A0B4J248 108 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 IGHV4-28A0A0C4DH34 117 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 TEX48A0A1B0GUV7 120 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 KLLNB2CW77 178 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 F6UZH7 168 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 H7BYZ3 331 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 IGKV2D-40P01614 121 aaPredicted RBP6.92□□□□□ -1.3
CCDC40-214ENST00000575431 TCRAP04437 139 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 FHITP49789 147 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 FGF8P55075 233 aaPredicted RBP6.92□□□□□ -1.3
CCDC40-214ENST00000575431 TAS2R60P59551 318 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 ERCC8Q13216 396 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 Q8NAQ8 132 aa6.92□□□□□ -1.3
CCDC40-214ENST00000575431 TRAV12-2A0A075B6T6 113 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 GPX1P07203 203 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 GOLT1AQ6ZVE7 132 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 C11orf45Q8TAV5 145 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 HIST1H2BAQ96A08 127 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 LINC01587Q99440 93 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 VGLL1Q99990 258 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 PYGO2Q9BRQ0 406 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 NIPSNAP3BQ9BS92 247 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 ATG101Q9BSB4 218 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 NDFIP1Q9BT67 221 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 TMPRSS5Q9H3S3 457 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 PLA2G2EQ9NZK7 142 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 EPDR1Q9UM22 224 aa6.91□□□□□ -1.3
CCDC40-214ENST00000575431 PRKDCP78527 4128 aaKnown RBP6.9□□□□□ -1.3
CCDC40-214ENST00000575431 C7orf71A4D174 169 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 FAM74A7A6NL05 159 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 GGTLC3B5MD39 225 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 IFNA7P01567 189 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 RBMY1A1P0DJD3 496 aaKnown RBP6.9□□□□□ -1.3
CCDC40-214ENST00000575431 RBMY1CP0DJD4 496 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 RBMY1FQ15415 496 aaKnown RBP6.9□□□□□ -1.3
CCDC40-214ENST00000575431 SAPCD1Q5SSQ6 148 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 GFI1BQ5VTD9 330 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 ZNF493Q6ZR52 646 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 CCDC28AQ8IWP9 274 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 CYB561D1Q8N8Q1 229 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 TXNDC17Q9BRA2 123 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 RPH3ALQ9UNE2 315 aa6.9□□□□□ -1.3
CCDC40-214ENST00000575431 TRAV12-3A0A0B4J271 114 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 LOC102723971A0A1B0GUV8 181 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 CXorf65A6NEN9 183 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 SPART-AS1P0CW21 52 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 PRB4P10163 310 aaPredicted RBP6.89□□□□□ -1.31
CCDC40-214ENST00000575431 TAGLN2P37802 199 aaKnown RBP6.89□□□□□ -1.31
CCDC40-214ENST00000575431 UBE2G2P60604 165 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 CST9LP1Q5W188 147 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 ZFAND2AQ8N6M9 145 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 TMEM75Q8N9X5 138 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 LINC00467Q9BRT7 94 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 MANBALQ9NQG1 85 aa6.89□□□□□ -1.31
CCDC40-214ENST00000575431 YTHDF2Q9Y5A9 579 aaKnown RBP6.89□□□□□ -1.31
CCDC40-214ENST00000575431 C11orf94C9JXX5 98 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 DEFB4AO15263 64 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 PAGE4O60829 102 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 ZNF324O75467 553 aaPredicted RBP6.88□□□□□ -1.31
CCDC40-214ENST00000575431 IFNA1P01562 189 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 S100A9P06702 114 aaKnown RBP6.88□□□□□ -1.31
CCDC40-214ENST00000575431 RNASE4P34096 147 aaKnown RBP6.88□□□□□ -1.31
CCDC40-214ENST00000575431 NKX2-5P52952 324 aaPredicted RBP6.88□□□□□ -1.31
CCDC40-214ENST00000575431 GNG5P63218 68 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 BLOC1S1P78537 153 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 FLI1Q01543 452 aaPredicted RBP6.88□□□□□ -1.31
CCDC40-214ENST00000575431 PMS2P11Q13670 270 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 Q8TAT8 98 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 TMEM263Q8WUH6 116 aaKnown RBP6.88□□□□□ -1.31
CCDC40-214ENST00000575431 C16orf74Q96GX8 76 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 TREM1Q9NP99 234 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 PSG8Q9UQ74 426 aa6.88□□□□□ -1.31
CCDC40-214ENST00000575431 NUPR2A6NF83 97 aa6.87□□□□□ -1.31
CCDC40-214ENST00000575431 LYRM9A8MSI8 78 aa6.87□□□□□ -1.31
CCDC40-214ENST00000575431 ZNF705GA8MUZ8 300 aaPredicted RBP6.87□□□□□ -1.31
CCDC40-214ENST00000575431 J3KRW8 73 aa6.87□□□□□ -1.31
CCDC40-214ENST00000575431 PEX7O00628 323 aa6.87□□□□□ -1.31
CCDC40-214ENST00000575431 RGS13O14921 159 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms