RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 MUCL1Q96DR8 90 aa2.55□□□□□ -2
NUP88-208ENST00000574087 C2orf50Q96LR7 162 aa2.55□□□□□ -2
NUP88-208ENST00000574087 AQP10Q96PS8 301 aa2.55□□□□□ -2
NUP88-208ENST00000574087 IMMP2LQ96T52 175 aa2.55□□□□□ -2
NUP88-208ENST00000574087 TBL1YQ9BQ87 522 aa2.55□□□□□ -2
NUP88-208ENST00000574087 PARP12Q9H0J9 701 aaKnown RBP2.55□□□□□ -2
NUP88-208ENST00000574087 AGPAT4-IT1Q9H0P7 198 aa2.55□□□□□ -2
NUP88-208ENST00000574087 SLC35B3Q9H1N7 401 aa2.55□□□□□ -2
NUP88-208ENST00000574087 C11orf68Q9H3H3 251 aaKnown RBP2.55□□□□□ -2
NUP88-208ENST00000574087 TMEM242Q9NWH2 141 aa2.55□□□□□ -2
NUP88-208ENST00000574087 DSPPQ9NZW4 1301 aa2.55□□□□□ -2
NUP88-208ENST00000574087 HES2Q9Y543 173 aa2.55□□□□□ -2
NUP88-208ENST00000574087 DNAJC15Q9Y5T4 150 aa2.55□□□□□ -2
NUP88-208ENST00000574087 TMEM14AQ9Y6G1 99 aa2.55□□□□□ -2
NUP88-208ENST00000574087 DENND4CQ5VZ89 1909 aa2.54□□□□□ -2
NUP88-208ENST00000574087 BRWD3Q6RI45 1802 aa2.54□□□□□ -2
NUP88-208ENST00000574087 STRCQ7RTU9 1775 aa2.54□□□□□ -2
NUP88-208ENST00000574087 QSER1Q2KHR3 1735 aa2.54□□□□□ -2
NUP88-208ENST00000574087 THSD7AQ9UPZ6 1657 aa2.54□□□□□ -2
NUP88-208ENST00000574087 SLIT2O94813 1529 aa2.54□□□□□ -2
NUP88-208ENST00000574087 IGLV1-50A0A075B6I6 118 aa2.54□□□□□ -2
NUP88-208ENST00000574087 TRAV12-2A0A075B6T6 113 aa2.54□□□□□ -2
NUP88-208ENST00000574087 SMIM26A0A096LP01 95 aa2.54□□□□□ -2
NUP88-208ENST00000574087 IGHV6-1A0A0B4J1U7 121 aa2.54□□□□□ -2
NUP88-208ENST00000574087 C3orf85A0A1B0GTC6 90 aa2.54□□□□□ -2
NUP88-208ENST00000574087 LOC389332A0A1B0GUA5 103 aa2.54□□□□□ -2
NUP88-208ENST00000574087 A8MUN3 132 aa2.54□□□□□ -2
NUP88-208ENST00000574087 UMAD1C9J7I0 102 aa2.54□□□□□ -2
NUP88-208ENST00000574087 NDUFC2-KCTD14E9PQ53 114 aa2.54□□□□□ -2
NUP88-208ENST00000574087 F8W1H4 67 aa2.54□□□□□ -2
NUP88-208ENST00000574087 LST1O00453 97 aa2.54□□□□□ -2
NUP88-208ENST00000574087 DEDDO75618 318 aa2.54□□□□□ -2
NUP88-208ENST00000574087 SLC25A14O95258 325 aaPredicted RBP2.54□□□□□ -2
NUP88-208ENST00000574087 MT-ND6P03923 174 aa2.54□□□□□ -2
NUP88-208ENST00000574087 PYYP10082 97 aa2.54□□□□□ -2
NUP88-208ENST00000574087 PSMB3P49720 205 aa2.54□□□□□ -2
NUP88-208ENST00000574087 ZNF138P52744 262 aa2.54□□□□□ -2
NUP88-208ENST00000574087 MP68P56378 58 aa2.54□□□□□ -2
NUP88-208ENST00000574087 SMIM11AP58511 58 aa2.54□□□□□ -2
NUP88-208ENST00000574087 SSBP1Q04837 148 aaKnown RBP2.54□□□□□ -2
NUP88-208ENST00000574087 ATP5G2Q06055 141 aa2.54□□□□□ -2
NUP88-208ENST00000574087 ELOBQ15370 118 aa2.54□□□□□ -2
NUP88-208ENST00000574087 Q56UQ5 140 aa2.54□□□□□ -2
NUP88-208ENST00000574087 UBE2NLQ5JXB2 153 aa2.54□□□□□ -2
NUP88-208ENST00000574087 COMMD6Q7Z4G1 85 aa2.54□□□□□ -2
NUP88-208ENST00000574087 HMGN2P46Q86SG4 172 aa2.54□□□□□ -2
NUP88-208ENST00000574087 C10orf111Q8N326 155 aa2.54□□□□□ -2
NUP88-208ENST00000574087 DRAM1Q8N682 238 aa2.54□□□□□ -2
NUP88-208ENST00000574087 MRPL30Q8TCC3 161 aaKnown RBP2.54□□□□□ -2
NUP88-208ENST00000574087 LRRC29Q8WV35 223 aa2.54□□□□□ -2
NUP88-208ENST00000574087 SMIM4Q8WVI0 70 aa2.54□□□□□ -2
NUP88-208ENST00000574087 MS4A6EQ96DS6 147 aa2.54□□□□□ -2
NUP88-208ENST00000574087 TVP23CQ96ET8 276 aa2.54□□□□□ -2
NUP88-208ENST00000574087 S100A16Q96FQ6 103 aaKnown RBP2.54□□□□□ -2
NUP88-208ENST00000574087 KCNS1Q96KK3 526 aa2.54□□□□□ -2
NUP88-208ENST00000574087 NAA60Q9H7X0 242 aa2.54□□□□□ -2
NUP88-208ENST00000574087 OR5V1Q9UGF6 321 aa2.54□□□□□ -2
NUP88-208ENST00000574087 MICAL3Q7RTP6 2002 aa2.54□□□□□ -2
NUP88-208ENST00000574087 NUP205Q92621 2012 aa2.54□□□□□ -2
NUP88-208ENST00000574087 SIPA1L3O60292 1781 aaPredicted RBP2.54□□□□□ -2
NUP88-208ENST00000574087 SHANK3Q9BYB0 1731 aa2.54□□□□□ -2
NUP88-208ENST00000574087 PEAK1Q9H792 1746 aa2.54□□□□□ -2
NUP88-208ENST00000574087 IGLV2-18A0A075B6J9 118 aa2.53□□□□□ -2
NUP88-208ENST00000574087 TRBV24-1A0A075B6N3 115 aa2.53□□□□□ -2
NUP88-208ENST00000574087 TRAV14DV4A0A0A6YYC5 116 aa2.53□□□□□ -2
NUP88-208ENST00000574087 TRAV1-2A0A0B4J238 106 aa2.53□□□□□ -2
NUP88-208ENST00000574087 TRAV41A0A0B4J266 112 aa2.53□□□□□ -2
NUP88-208ENST00000574087 A8MWV9 139 aa2.53□□□□□ -2
NUP88-208ENST00000574087 C4orf51C9J302 202 aa2.53□□□□□ -2
NUP88-208ENST00000574087 M0R378 163 aa2.53□□□□□ -2
NUP88-208ENST00000574087 M0R381 172 aa2.53□□□□□ -2
NUP88-208ENST00000574087 PITX3O75364 302 aa2.53□□□□□ -2
NUP88-208ENST00000574087 NDUFB2O95178 105 aa2.53□□□□□ -2
NUP88-208ENST00000574087 CYB5AP00167 134 aa2.53□□□□□ -2
NUP88-208ENST00000574087 SLC25A6P12236 298 aa2.53□□□□□ -2
NUP88-208ENST00000574087 S100A3P33764 101 aa2.53□□□□□ -2
NUP88-208ENST00000574087 CAV3P56539 151 aa2.53□□□□□ -2
NUP88-208ENST00000574087 LINC00313P59037 77 aa2.53□□□□□ -2
NUP88-208ENST00000574087 C6orf99Q4VX62 202 aa2.53□□□□□ -2
NUP88-208ENST00000574087 C9orf153Q5TBE3 101 aa2.53□□□□□ -2
NUP88-208ENST00000574087 C12orf73Q69YU5 71 aa2.53□□□□□ -2
NUP88-208ENST00000574087 SLC25A34Q6PIV7 304 aa2.53□□□□□ -2
NUP88-208ENST00000574087 CEMP1Q6PRD7 247 aaPredicted RBP2.53□□□□□ -2
NUP88-208ENST00000574087 LINC00305Q7Z4B0 112 aa2.53□□□□□ -2
NUP88-208ENST00000574087 TEN1Q86WV5 123 aa2.53□□□□□ -2
NUP88-208ENST00000574087 C10orf126Q8N4M7 172 aa2.53□□□□□ -2
NUP88-208ENST00000574087 STAG3L4Q8TBR4 150 aa2.53□□□□□ -2
NUP88-208ENST00000574087 DCANP1Q8TF63 244 aa2.53□□□□□ -2
NUP88-208ENST00000574087 BRK1Q8WUW1 75 aa2.53□□□□□ -2
NUP88-208ENST00000574087 CCL13Q99616 98 aa2.53□□□□□ -2
NUP88-208ENST00000574087 SLC25A2Q9BXI2 301 aa2.53□□□□□ -2
NUP88-208ENST00000574087 BCL2L10Q9HD36 194 aa2.53□□□□□ -2
NUP88-208ENST00000574087 FAM60AQ9NP50 221 aa2.53□□□□□ -2
NUP88-208ENST00000574087 ANK1P16157 1881 aa2.53□□□□□ -2
NUP88-208ENST00000574087 DOT1LQ8TEK3 1739 aa2.53□□□□□ -2
NUP88-208ENST00000574087 AHDC1Q5TGY3 1603 aaPredicted RBP2.53□□□□□ -2
NUP88-208ENST00000574087 RGPD3A6NKT7 1758 aaPredicted RBP2.52□□□□□ -2.01
NUP88-208ENST00000574087 RGPD4Q7Z3J3 1758 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 NUP188Q5SRE5 1749 aa2.52□□□□□ -2.01
NUP88-208ENST00000574087 TRAV13-1A0A0B4J241 112 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms