RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TWIST1Q15672 202 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 PIP4P2Q8N4L2 257 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 BPESC1Q9GZL8 116 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 PAX8Q06710 450 aa17.59■□□□□ 0.41
VPS53-211ENST00000571805 COX11Q9Y6N1 276 aa17.59■□□□□ 0.41
VPS53-211ENST00000571805 MPV17L2Q567V2 206 aa17.59■□□□□ 0.41
VPS53-211ENST00000571805 FABP5P3A8MUU1 101 aa17.58■□□□□ 0.41
VPS53-211ENST00000571805 GOSR1O95249 250 aa17.58■□□□□ 0.41
VPS53-211ENST00000571805 CLEC19AQ6UXS0 136 aa17.58■□□□□ 0.41
VPS53-211ENST00000571805 RNF182Q8N6D2 247 aa17.58■□□□□ 0.41
VPS53-211ENST00000571805 NPFFO15130 113 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 ORM1P02763 201 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 CNFNQ9BYD5 112 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 CACNA1BQ00975 2339 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 RBAKDNA6NC62 111 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 SMKR1H3BMG3 65 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 LY6DQ14210 128 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 MSRB1Q9NZV6 116 aa17.57■□□□□ 0.4
VPS53-211ENST00000571805 IGHV3-66A0A0C4DH42 116 aa17.56■□□□□ 0.4
VPS53-211ENST00000571805 NPYP01303 97 aa17.56■□□□□ 0.4
VPS53-211ENST00000571805 CKS2P33552 79 aa17.56■□□□□ 0.4
VPS53-211ENST00000571805 SPTBN4Q9H254 2564 aa17.55■□□□□ 0.4
VPS53-211ENST00000571805 NUDT3O95989 172 aa17.55■□□□□ 0.4
VPS53-211ENST00000571805 C5orf56Q8N8D9 126 aa17.55■□□□□ 0.4
VPS53-211ENST00000571805 ZNF738Q8NE65 137 aa17.55■□□□□ 0.4
VPS53-211ENST00000571805 SLC50A1Q9BRV3 221 aa17.55■□□□□ 0.4
VPS53-211ENST00000571805 LINC01559Q495D7 138 aa17.54■□□□□ 0.4
VPS53-211ENST00000571805 OR8A1Q8NGG7 326 aa17.54■□□□□ 0.4
VPS53-211ENST00000571805 EEF1AKMT3Q96AZ1 226 aa17.54■□□□□ 0.4
VPS53-211ENST00000571805 RNF185Q96GF1 192 aa17.54■□□□□ 0.4
VPS53-211ENST00000571805 TCF21O43680 179 aa17.54■□□□□ 0.4
VPS53-211ENST00000571805 IL17RELQ6ZVW7 336 aa17.54■□□□□ 0.4
VPS53-211ENST00000571805 IGHV3OR16-13A0A075B7E8 117 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 IGHV3-74A0A0B4J1X5 117 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 TRAV8-2A0A0B4J237 113 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 CCL25O15444 150 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 FXYD7P58549 80 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 BVES-AS1Q5T3Y7 98 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 ITLN2Q8WWU7 325 aaPredicted RBP17.53■□□□□ 0.4
VPS53-211ENST00000571805 TRBV7-1A0A0A6YYK4 115 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 COX8AP10176 69 aa17.53■□□□□ 0.4
VPS53-211ENST00000571805 C19orf84I3L1E1 186 aa17.52■□□□□ 0.4
VPS53-211ENST00000571805 HBDP02042 147 aa17.52■□□□□ 0.4
VPS53-211ENST00000571805 AGPAT4-IT1Q9H0P7 198 aa17.52■□□□□ 0.4
VPS53-211ENST00000571805 U3KQE9 123 aa17.52■□□□□ 0.39
VPS53-211ENST00000571805 LGALS9BQ3B8N2 356 aa17.51■□□□□ 0.39
VPS53-211ENST00000571805 LGALS9CQ6DKI2 356 aa17.51■□□□□ 0.39
VPS53-211ENST00000571805 PRSS57Q6UWY2 283 aa17.51■□□□□ 0.39
VPS53-211ENST00000571805 AKAP6Q13023 2319 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 ZNF207O43670 478 aaKnown RBP17.5■□□□□ 0.39
VPS53-211ENST00000571805 UBE2V1Q13404 147 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 FOXE3Q13461 319 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 METTL26Q96S19 204 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 C11orf21Q9P2W6 132 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 IGHV3-49A0A0A0MS15 119 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 GAS8-AS1O95177 125 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 PTTG1IPP53801 180 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 C12orf54Q6X4T0 127 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 TMEM219Q86XT9 240 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 DPF1Q92782 380 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 ZFHX3Q15911 3703 aa17.5■□□□□ 0.39
VPS53-211ENST00000571805 IGKV3D-20A0A0C4DH25 116 aa17.49■□□□□ 0.39
VPS53-211ENST00000571805 HIST1H1AQ02539 215 aaPredicted RBP17.49■□□□□ 0.39
VPS53-211ENST00000571805 C19orf54Q5BKX5 351 aa17.49■□□□□ 0.39
VPS53-211ENST00000571805 C2orf91Q6ZV80 131 aa17.49■□□□□ 0.39
VPS53-211ENST00000571805 ITPR1Q14643 2758 aa17.49■□□□□ 0.39
VPS53-211ENST00000571805 PPIFP30405 207 aaKnown RBP17.48■□□□□ 0.39
VPS53-211ENST00000571805 ATP5G2Q06055 141 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 NPFFR1Q9GZQ6 430 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 LINC01546A6NGU7 62 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 TAX1BP3O14907 124 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 PPBPP02775 128 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 ANKRD39Q53RE8 183 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 C8orf86Q6ZUL3 223 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 MRPL53Q96EL3 112 aaKnown RBP17.48■□□□□ 0.39
VPS53-211ENST00000571805 CHD8Q9HCK8 2581 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 NCOR2Q9Y618 2525 aa17.48■□□□□ 0.39
VPS53-211ENST00000571805 UQCRFS1P47985 274 aa17.47■□□□□ 0.39
VPS53-211ENST00000571805 PIFOQ8TCI5 191 aa17.47■□□□□ 0.39
VPS53-211ENST00000571805 IGHV4-39P01824 125 aa17.47■□□□□ 0.39
VPS53-211ENST00000571805 CACNG7P62955 275 aa17.47■□□□□ 0.39
VPS53-211ENST00000571805 DEFB125Q8N687 156 aa17.47■□□□□ 0.39
VPS53-211ENST00000571805 IFI27L1Q96BM0 104 aa17.47■□□□□ 0.39
VPS53-211ENST00000571805 FGF6P10767 208 aa17.46■□□□□ 0.39
VPS53-211ENST00000571805 MOB4Q9Y3A3 225 aa17.46■□□□□ 0.39
VPS53-211ENST00000571805 ABCA2Q9BZC7 2435 aa17.46■□□□□ 0.39
VPS53-211ENST00000571805 TRAV41A0A0B4J266 112 aa17.46■□□□□ 0.39
VPS53-211ENST00000571805 MAP1LC3AQ9H492 121 aa17.46■□□□□ 0.39
VPS53-211ENST00000571805 IGHV3OR16-10A0A075B7F0 116 aa17.45■□□□□ 0.38
VPS53-211ENST00000571805 TMEM78Q5T7P6 136 aa17.45■□□□□ 0.38
VPS53-211ENST00000571805 C9orf47Q6ZRZ4 202 aa17.45■□□□□ 0.38
VPS53-211ENST00000571805 ATP6V0BQ99437 205 aa17.45■□□□□ 0.38
VPS53-211ENST00000571805 HIF1ANQ9NWT6 349 aa17.45■□□□□ 0.38
VPS53-211ENST00000571805 LINC00527Q9UJ94 153 aa17.45■□□□□ 0.38
VPS53-211ENST00000571805 SNAI2O43623 268 aa17.44■□□□□ 0.38
VPS53-211ENST00000571805 TNFRSF6BO95407 300 aa17.44■□□□□ 0.38
VPS53-211ENST00000571805 CRIP2P52943 208 aaPredicted RBP17.44■□□□□ 0.38
VPS53-211ENST00000571805 OR1N2Q8NGR9 330 aa17.44■□□□□ 0.38
VPS53-211ENST00000571805 PRORYQ9H606 182 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms