RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PRYO14603 147 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 HYPMO75409 117 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 IGLV2-11P01706 119 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 CD3DP04234 171 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 SLC25A5P05141 298 aaKnown RBP3.82□□□□□ -1.8
VPS53-208ENST00000570650 IGKV2-30P06310 120 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 OR5G3P0C626 314 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 CT45A10P0DMU9 189 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 TNFSF8P32971 234 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 AKR1C1Q04828 323 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 SCGB2B2Q4G0G5 96 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 LINC01620Q4KN68 170 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 C10orf25Q5T742 122 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 ACOT7LQ6ZUV0 252 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 S100A7AQ86SG5 101 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 BLNKQ8WV28 456 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 TMEM37Q8WXS4 190 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 RTBDNQ9BSG5 229 aaPredicted RBP3.82□□□□□ -1.8
VPS53-208ENST00000570650 ZNF331Q9NQX6 463 aaPredicted RBP3.82□□□□□ -1.8
VPS53-208ENST00000570650 MRPL16Q9NX20 251 aaKnown RBP3.82□□□□□ -1.8
VPS53-208ENST00000570650 PAIP2BQ9ULR5 123 aaKnown RBP3.82□□□□□ -1.8
VPS53-208ENST00000570650 RNF24Q9Y225 148 aa3.82□□□□□ -1.8
VPS53-208ENST00000570650 RBFOX3A6NFN3 312 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 C9JCJ5 164 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 PRAC2D3DTV9 90 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 PRSS46E5RG02 174 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 LECT2O14960 151 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 MRPS12O15235 138 aaKnown RBP3.81□□□□□ -1.8
VPS53-208ENST00000570650 APOA1P02647 267 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 IL5P05113 134 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 LINC00869P0C866 280 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 IAPPP10997 89 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 AKR1C4P17516 323 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 ANXA7P20073 488 aaKnown RBP3.81□□□□□ -1.8
VPS53-208ENST00000570650 PPT1P50897 306 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 PLP1P60201 277 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 Q6ZRU5 148 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 CYP2G1PQ6ZSU1 146 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 SH2D6Q7Z4S9 175 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 IQCF2Q8IXL9 164 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 OR4D10Q8NGI6 311 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 SLC25A31Q9H0C2 315 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 RNF213Q63HN8 5207 aa3.81□□□□□ -1.8
VPS53-208ENST00000570650 TRAV8-6A0A0B4J262 113 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 A0A0B4J2A0 478 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 KLLNB2CW77 178 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 MPDU1O75352 247 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 GAS8-AS1O95177 125 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 RAB3DO95716 219 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 IGHV3-30P01768 117 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 IGHV3-33P01772 117 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 SFTA3P0C7M3 94 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 IGHV3-30-3P0DP02 117 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 IGHV3-30-5P0DP03 117 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 TAS2R19P59542 299 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 RPP30P78346 268 aaKnown RBP3.8□□□□□ -1.8
VPS53-208ENST00000570650 BTN1A1Q13410 526 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 LAGE3Q14657 143 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 ZNF846Q147U1 533 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 SURF2Q15527 256 aaPredicted RBP3.8□□□□□ -1.8
VPS53-208ENST00000570650 LCE1AQ5T7P2 110 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 C9orf47Q6ZRZ4 202 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 TMEM229BQ8NBD8 167 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 OR10G4Q8NGN3 311 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 ZNF479Q96JC4 524 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 ARPC5LQ9BPX5 153 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 COMMD3Q9UBI1 195 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 MTFP1Q9UDX5 166 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 SHPKQ9UHJ6 478 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 KCNIP3Q9Y2W7 256 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 PXMP4Q9Y6I8 212 aa3.8□□□□□ -1.8
VPS53-208ENST00000570650 SLC17A3O00476 420 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 MED6O75586 246 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 CCNKO75909 580 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 SNRPCP09234 159 aaKnown RBP3.79□□□□□ -1.8
VPS53-208ENST00000570650 TGFBR1P36897 503 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 SELENOTP62341 195 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 CD300CQ08708 224 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 OR10J3Q5JRS4 329 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 LYZL2Q7Z4W2 148 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 BPIFA4PQ86YQ2 179 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 Q8N976 141 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 NHLRC2Q8NBF2 726 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 OR51S1Q8NGJ8 323 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 OR52I2Q8NH67 350 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 BAALCQ8WXS3 180 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 CIB3Q96Q77 187 aaPredicted RBP3.79□□□□□ -1.8
VPS53-208ENST00000570650 PAXXQ9BUH6 204 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 ARL6Q9H0F7 186 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 ARV1Q9H2C2 271 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 TP53TG3Q9ULZ0 132 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 GPR132Q9UNW8 380 aa3.79□□□□□ -1.8
VPS53-208ENST00000570650 IGHV1OR15-1A0A075B7D0 117 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 TRAV8-3A0A0A6YYJ7 113 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 LOC100131303A0A0U1RQF7 123 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 SMCO3A2RU48 225 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 DISC1C4P0D8 188 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 H3BTX0 84 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 HPGDSO60760 199 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 PITX3O75364 302 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms