RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 VCYO14598 125 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 SS18L1O75177 396 aaPredicted RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 LYZL6O75951 148 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 GAS8-AS1O95177 125 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 LYPD3O95274 346 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 ACYP1P07311 99 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 VPREB1P12018 145 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 GP1BBP13224 206 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 PSMB2P49721 201 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 UBE2D1P51668 147 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 UBE2E1P51965 193 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 APOC4P55056 127 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 BRWD1-AS2P59051 145 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 FKBP1AP62942 108 aaKnown RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 CCL8P80075 99 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 RPL18AQ02543 176 aaKnown RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 ZNF816Q0VGE8 651 aaPredicted RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 ERCC8Q13216 396 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 SRSF9Q13242 221 aaKnown RBP eCLIP2.48□□□□□ -2.01
VPS35-208ENST00000568612 DEFB121Q5J5C9 76 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 GDF5OSQ5U4N7 250 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 CEMP1Q6PRD7 247 aaPredicted RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 FOXL2NBQ6ZUU3 175 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 C5orf38Q86SI9 138 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 SLC22A24Q8N4F4 322 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 SERP2Q8N6R1 65 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 C11orf45Q8TAV5 145 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 C10orf105Q8TEF2 133 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 IFI27L1Q96BM0 104 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 FMC1Q96HJ9 113 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 ZNF414Q96IQ9 312 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 UBE2E2Q96LR5 201 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 GPX7Q96SL4 187 aaPredicted RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 TRGV9Q99603 122 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 PRRG4Q9BZD6 226 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 CYSTM1Q9H1C7 97 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 DPH3P1Q9H4G8 78 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 NXT2Q9NPJ8 142 aaKnown RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 DAZ1Q9NQZ3 744 aaKnown RBP2.48□□□□□ -2.01
VPS35-208ENST00000568612 STARD5Q9NSY2 213 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 TMEM14AQ9Y6G1 99 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 DOCK11Q5JSL3 2073 aa2.48□□□□□ -2.01
VPS35-208ENST00000568612 COL4A1P02462 1669 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 LRP4O75096 1905 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 TMSB15BA0A087X1C1 80 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 PLAC8L1A1L4L8 177 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 KNCNA6PVL3 124 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 UPK2O00526 184 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 TCRAP04437 139 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 IFI6P09912 130 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 SLC25A16P16260 332 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 CCL1P22362 96 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 LMO2P25791 158 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 MFAP2P55001 183 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 ATP5EP56381 51 aaPredicted RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 HERVK_113P61574 105 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 ERVK-16P61578 105 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 CACNG7P62955 275 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 HBBP68871 147 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 MRPS36P82909 103 aaKnown RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 DAZ2Q13117 558 aaKnown RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 ZNF56Q15929 161 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 KRTAP27-1Q3LI81 207 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 TMEM52BQ4KMG9 183 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 TMEM155Q4W5P6 130 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 CENPWQ5EE01 88 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 FHL5Q5TD97 284 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 FP248Q71RG6 208 aaPredicted RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 DAZ4Q86SG3 579 aaKnown RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 LINC00643Q86TS7 51 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 RPRMLQ8N4K4 120 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 RNF182Q8N6D2 247 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 OR52N5Q8NH56 324 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 PFN4Q8NHR9 129 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 RPP25Q9BUL9 199 aaKnown RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 SRXN1Q9BYN0 137 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 AICDAQ9GZX7 198 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 DAZ3Q9NR90 486 aaKnown RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 PHPT1Q9NRX4 125 aaPredicted RBP2.47□□□□□ -2.01
VPS35-208ENST00000568612 SLC25A15Q9Y619 301 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 LHFPL6Q9Y693 200 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 COL4A5P29400 1685 aa2.47□□□□□ -2.01
VPS35-208ENST00000568612 TRBV10-2A0A0K0K1G8 114 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 INS-IGF2F8WCM5 200 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 H3BVH4 76 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 MRPS12O15235 138 aaKnown RBP2.46□□□□□ -2.02
VPS35-208ENST00000568612 CCL16O15467 120 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 SYNGR2O43760 224 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 SPINK4O60575 86 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 LTAP01374 205 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 IGKV1D-16P01601 117 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 BGLAPP02818 100 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 CISD3P0C7P0 127 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 ZNF883P0CG24 379 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 CA6P23280 308 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 NCBP2P52298 156 aaKnown RBP eCLIP2.46□□□□□ -2.02
VPS35-208ENST00000568612 KRTAP10-6P60371 365 aaPredicted RBP2.46□□□□□ -2.02
VPS35-208ENST00000568612 FAM104BQ5XKR9 115 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 GFRALQ6UXV0 394 aa2.46□□□□□ -2.02
VPS35-208ENST00000568612 ZFP2Q6ZN57 461 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms