RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 AKR1D1P51857 326 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 FXYD2P54710 66 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 FOXA3P55318 350 aaPredicted RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 MRPS10P82664 201 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 MYL5Q02045 173 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 RELAQ04206 551 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SS18Q15532 418 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 TMEM155Q4W5P6 130 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 PABPC1L2AQ5JQF8 200 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 EIF5AL1Q6IS14 154 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 SCIMPQ6UWF3 145 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 LYZL1Q6UWQ5 148 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 LCN15Q6UWW0 184 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 DPPA3Q6W0C5 159 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SLC35E3Q7Z769 313 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 RPS19BP1Q86WX3 136 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 WFDC11Q8NEX6 87 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 OR4B1Q8NGF8 309 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 OR5D14Q8NGL3 314 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 DIRC1Q969H9 104 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 MRPS24Q96EL2 167 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 PPP3R2Q96LZ3 170 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 MCEEQ96PE7 176 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 RETNLBQ9BQ08 111 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 NAA38Q9BRA0 125 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 PDCD10Q9BUL8 212 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 TMEM191AQ9H0A3 160 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 BCL2L10Q9HD36 194 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 NIT2Q9NQR4 276 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 TXNL4BQ9NX01 149 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 TIMM9Q9Y5J7 89 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 FAM215AQ9Y5M1 114 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SOX21Q9Y651 276 aaPredicted RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 MINOS1-NBL1R4GNA1 71 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 MYOM2P54296 1465 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SCAF11Q99590 1463 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 ADGRB1O14514 1584 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 RB1CC1Q8TDY2 1594 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 KNTC1P50748 2209 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 MED13LQ71F56 2210 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 COL4A1P02462 1669 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 USP54Q70EL1 1684 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 ABCA1O95477 2261 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 RGS12O14924 1447 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 NAIPQ13075 1403 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 PHIPQ8WWQ0 1821 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 PI4KAP42356 2102 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TET1Q8NFU7 2136 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 IGKV1D-42A0A075B6H8 117 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 IGHV1-18A0A0C4DH31 117 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 A0A0G2JMM0 328 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 A0A1B0GVG6 124 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 A0A1W2PPB8 328 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 KIR3DP1A8MWS1 328 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 M0R129 80 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 OR1I1O60431 355 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 ZNF737O75373 536 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 HBDP02042 147 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CTSDP07339 412 aaPredicted RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 ZNF705BP0CI00 300 aaPredicted RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 AKAIN1P0CW23 69 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TPT1P13693 172 aaKnown RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 HLA-DRB4P13762 266 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 FABP4P15090 132 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 FGF7P21781 194 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 GNG4P50150 75 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 SNRPD3P62318 126 aaKnown RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 PLGLB1Q02325 96 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CDK5R1Q15078 307 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 NNATQ16517 81 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CCSMST1Q4G0I0 132 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 IZUMO2Q6UXV1 221 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TMEM91Q6ZNR0 172 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 Q6ZQT0 140 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 C3orf62Q6ZUJ4 267 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 AAED1Q7RTV5 226 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TEN1Q86WV5 123 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 Q8IYB0 196 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 LINC00311Q8N616 119 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 FAM216BQ8N7L0 139 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TCTEX1D1Q8N7M0 179 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CLEC2BQ92478 149 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CHCHD1Q96BP2 118 aaKnown RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 OR4C12Q96R67 309 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 SDF2Q99470 211 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 LINC00467Q9BRT7 94 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 PSMG3Q9BT73 122 aaPredicted RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 CST9LQ9H4G1 147 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 NHP2Q9NX24 153 aaKnown RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 SCN3BQ9NY72 215 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CCDC167Q9P0B6 97 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 COMMD3Q9UBI1 195 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 BOKQ9UMX3 212 aaPredicted RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 HHLA3Q9XRX5 114 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 HLA-DRB4X5D2U9 266 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 A2ML1A8K2U0 1454 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 PZPP20742 1482 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 RAPGEF2Q9Y4G8 1499 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TTC37Q6PGP7 1564 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms