RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 CLDN25C9JDP6 229 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 GNRH2O43555 120 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 SULT1B1O43704 296 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 MSNP26038 577 aaKnown RBP2.46□□□□□ -2.02
VPS13C-210ENST00000561258 KRTAP10-10P60014 251 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 FOXF1Q12946 379 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 NNATQ16517 81 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 MIAQ16674 131 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 LIN52Q52LA3 116 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 HACD4Q5VWC8 232 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 TMPPEQ6ZT21 453 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 TCF24Q7RTU0 167 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 PXT1Q8NFP0 134 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 OR4C16Q8NGL9 310 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 BTF3L4Q96K17 158 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 CMSS1Q9BQ75 279 aaKnown RBP2.46□□□□□ -2.02
VPS13C-210ENST00000561258 RNASE7Q9H1E1 156 aaKnown RBP2.46□□□□□ -2.02
VPS13C-210ENST00000561258 NMNAT1Q9HAN9 279 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-210ENST00000561258 XAGE1AQ9HD64 81 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 PSORS1C2Q9UIG4 136 aa2.46□□□□□ -2.02
VPS13C-210ENST00000561258 KIAA2026Q5HYC2 2103 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 DNAH10Q8IVF4 4471 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 OR51F1A6NGY5 319 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 PDE6DO43924 150 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 OR5F1O95221 314 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 BLVRBP30043 206 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-210ENST00000561258 S100A7P31151 101 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 RPL22P35268 128 aaKnown RBP2.45□□□□□ -2.02
VPS13C-210ENST00000561258 CSN1S1P47710 185 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 DEFA1P59665 94 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 HCP5Q6MZN7 132 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 OR52L1Q8NGH7 329 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 MRPL30Q8TCC3 161 aaKnown RBP2.45□□□□□ -2.02
VPS13C-210ENST00000561258 C20orf166-AS1Q96NR2 134 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 NIPSNAP1Q9BPW8 284 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 TMEM147Q9BVK8 224 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 KIFC1Q9BW19 673 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 EFCAB1Q9HAE3 211 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 MED11Q9P086 117 aa2.45□□□□□ -2.02
VPS13C-210ENST00000561258 SAMHD1Q9Y3Z3 626 aaKnown RBP2.45□□□□□ -2.02
VPS13C-210ENST00000561258 HUWE1Q7Z6Z7 4374 aaKnown RBP2.45□□□□□ -2.02
VPS13C-210ENST00000561258 IGHV1-18A0A0C4DH31 117 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 FAM159BA6NKW6 160 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 TRAPPC2LH3BP13 241 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 LEPROTO15243 131 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 ZNF73O43830 326 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-210ENST00000561258 TFPTP0C1Z6 253 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 PRB4P10163 310 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-210ENST00000561258 ALDH3A1P30838 453 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 MAGEA12P43365 314 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 CCL8P80075 99 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 AKR1C1Q04828 323 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 POU6F1Q14863 301 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 DHRS4L2Q6PKH6 230 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 OR51A2Q8NGJ7 313 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 CEP19Q96LK0 163 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 AIF1LQ9BQI0 150 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 COMMD5Q9GZQ3 224 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 UQCC1Q9NVA1 299 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 RBM7Q9Y580 266 aaKnown RBP2.44□□□□□ -2.02
VPS13C-210ENST00000561258 TMEM56-RWDD3S4R434 201 aa2.44□□□□□ -2.02
VPS13C-210ENST00000561258 A0A0J9YW62 118 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 SDHAF1A6NFY7 115 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 E5RI56 91 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 LGALS3P17931 250 aaKnown RBP2.43□□□□□ -2.02
VPS13C-210ENST00000561258 EVX1P49640 407 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 DYNLT1P63172 113 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 CCL20P78556 96 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 TEX36Q5VZQ5 186 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 C12orf45Q8N5I9 185 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-210ENST00000561258 AP3S1Q92572 193 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 PHB2Q99623 299 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 ARMC1Q9NVT9 282 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 FUT9Q9Y231 359 aa2.43□□□□□ -2.02
VPS13C-210ENST00000561258 IGKV1D-43A0A0B4J1Z2 117 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 TMEM238C9JI98 176 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 ZNF189O75820 626 aaPredicted RBP2.42□□□□□ -2.02
VPS13C-210ENST00000561258 CRYZL1O95825 349 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 CLPSP04118 112 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 PRM2P04554 102 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 UCHL1P09936 223 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 SERPINB9P50453 376 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 VBP1P61758 197 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 TNFRSF9Q07011 255 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 C12orf74Q32Q52 190 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 AGTRAPQ6RW13 159 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 MCFD2Q8NI22 146 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 C20orf27Q9GZN8 174 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 C11orf68Q9H3H3 251 aaKnown RBP2.42□□□□□ -2.02
VPS13C-210ENST00000561258 TUBA4BQ9H853 241 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 IL36BQ9NZH7 164 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 TP73-AS1Q9UF72 201 aa2.42□□□□□ -2.02
VPS13C-210ENST00000561258 FAM32AQ9Y421 112 aaKnown RBP2.42□□□□□ -2.02
VPS13C-210ENST00000561258 HSPG2P98160 4391 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 RNF213Q63HN8 5207 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 MUC21A0A0G2JKD1 596 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 MUC21A0A140T8X8 626 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 EXOC1LA0A1B0GW35 172 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 TCRBV4S1A1TA0A5B7 111 aa2.41□□□□□ -2.02
VPS13C-210ENST00000561258 MRPL33O75394 65 aaKnown RBP2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms