RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 ZNF138P52744 262 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 PROK1P58294 105 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 COX19Q49B96 90 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 TMEM78Q5T7P6 136 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 ZNF738Q8NE65 137 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 OR9G4Q8NGQ1 327 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 DCANP1Q8TF63 244 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 C20orf173Q96LM9 149 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 GFRA4Q9GZZ7 299 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 LENEPQ9Y5L5 61 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 ANK3Q12955 4377 aaKnown RBP12.94□□□□□ -0.34
HDDC3-206ENST00000561036 NOTCH2Q04721 2471 aa12.94□□□□□ -0.34
HDDC3-206ENST00000561036 IZUMO1RA6ND01 250 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 EDN2P20800 178 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 FHL3Q13643 280 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 SMUG1Q53HV7 270 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 FAM162BQ5T6X4 162 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 LINC00477Q96M19 166 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 AGPAT4-IT1Q9H0P7 198 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 MS4A6AQ9H2W1 248 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 NAT8BQ9UHF3 227 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 OTOGQ6ZRI0 2925 aa12.93□□□□□ -0.34
HDDC3-206ENST00000561036 A0A1B0GUS0 222 aa12.92□□□□□ -0.34
HDDC3-206ENST00000561036 OR10J6PQ8NGY7 276 aa12.92□□□□□ -0.34
HDDC3-206ENST00000561036 RAX2Q96IS3 184 aa12.92□□□□□ -0.34
HDDC3-206ENST00000561036 C8orf49Q96NF6 230 aa12.92□□□□□ -0.34
HDDC3-206ENST00000561036 CITED2Q99967 270 aaPredicted RBP12.92□□□□□ -0.34
HDDC3-206ENST00000561036 BAHCC1Q9P281 2608 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 TRAV2A0A0B4J234 112 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 CCL24O00175 119 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 TRGC2P03986 189 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 CRIP1P50238 77 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 PAFAH1B2P68402 229 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 SRSF2Q01130 221 aaKnown RBP12.91□□□□□ -0.34
HDDC3-206ENST00000561036 ERCC8Q13216 396 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 RASL11AQ6T310 242 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 ADAMTSL5Q6ZMM2 481 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 Q8TAT8 98 aa12.91□□□□□ -0.34
HDDC3-206ENST00000561036 DLX4Q92988 240 aaPredicted RBP12.91□□□□□ -0.34
HDDC3-206ENST00000561036 TRBV7-9A0A0J9YWB2 115 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 K7EQG2 157 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 HAX1O00165 279 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 PHOX2AO14813 284 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 CA1P00915 261 aaPredicted RBP12.9□□□□□ -0.34
HDDC3-206ENST00000561036 CSN3P07498 182 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 TCL1AP56279 114 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 OR2D3Q8NGH3 330 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 ASCL2Q99929 193 aa12.9□□□□□ -0.34
HDDC3-206ENST00000561036 SAV1Q9H4B6 383 aaPredicted RBP12.9□□□□□ -0.34
HDDC3-206ENST00000561036 IGKV3-7A0A075B6H7 116 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 LOC105371267A0A1B0GV96 52 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 XKRY2A2RUG3 117 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 SH2D1AO60880 128 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 PRB4P10163 310 aaPredicted RBP12.89□□□□□ -0.35
HDDC3-206ENST00000561036 FOXA3P55318 350 aaPredicted RBP12.89□□□□□ -0.35
HDDC3-206ENST00000561036 SNRPD3P62318 126 aaKnown RBP12.89□□□□□ -0.35
HDDC3-206ENST00000561036 ACTL10Q5JWF8 245 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 WDR73Q6P4I2 378 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 ZFP82Q8N141 532 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 NUP35Q8NFH5 326 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 OR8A1Q8NGG7 326 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 NEU1Q99519 415 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 GPR61Q9BZJ8 451 aa12.89□□□□□ -0.35
HDDC3-206ENST00000561036 FABP5P3A8MUU1 101 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 HIGD1CA8MV81 97 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 MT-ND6P03923 174 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 RPS20P60866 119 aaKnown RBP12.88□□□□□ -0.35
HDDC3-206ENST00000561036 RBPMS2Q6ZRY4 209 aaKnown RBP12.88□□□□□ -0.35
HDDC3-206ENST00000561036 ATP5L2Q7Z4Y8 100 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 C11orf44Q8N8P7 122 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 DUX3Q96PT4 197 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 GNB1LQ9BYB4 327 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 SIGLEC8Q9NYZ4 499 aa12.88□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H1AQ02539 215 aaPredicted RBP12.87□□□□□ -0.35
HDDC3-206ENST00000561036 Q6AWC8 147 aa12.87□□□□□ -0.35
HDDC3-206ENST00000561036 TRAPPC1Q9Y5R8 145 aa12.87□□□□□ -0.35
HDDC3-206ENST00000561036 A0A1W2PRX2 142 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 TMEM189A5PLL7 270 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 S100A6P06703 90 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 WFDC3Q8IUB2 231 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 DYNLRB2Q8TF09 96 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 GTSF1Q8WW33 167 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 FRZBQ92765 325 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 FAM19A4Q96LR4 140 aa12.86□□□□□ -0.35
HDDC3-206ENST00000561036 MTORP42345 2549 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 TRAV25A0A0B4J276 109 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BKO60814 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BJP06899 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BOP23527 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BBP33778 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 ZNF80P51504 273 aaPredicted RBP12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BDP58876 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BCP62807 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST2H2BEQ16778 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.85□□□□□ -0.35
HDDC3-206ENST00000561036 NDUFA11Q86Y39 141 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BHQ93079 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BNQ99877 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 HIST1H2BMQ99879 126 aa12.85□□□□□ -0.35
HDDC3-206ENST00000561036 ADARB2-AS1A8MUL3 147 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms