RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 GAGE12JA6NER3 117 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 K7EP13 123 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 K7EP34 96 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 HLA-DRB4P13762 266 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 CEACAM8P31997 349 aaPredicted RBP10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 TCF15Q12870 199 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 GAGE4Q13068 117 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 GAGE5Q13069 117 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 HLA-DRB4X5D2U9 266 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 SMIM27A0A1W2PRY6 76 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 NDUFA4O00483 81 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 CYYR1Q96J86 154 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 TMEM243Q9BU79 118 aa10.59□□□□□ -0.71
CSPG4P11-201ENST00000560634 KNCNA6PVL3 124 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 MSMBP08118 114 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 C1orf147Q96MC9 270 aaPredicted RBP10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 PYGO2Q9BRQ0 406 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 SMIM2Q9BVW6 85 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 TSSC4Q9Y5U2 329 aaPredicted RBP10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 IGHV2-5P01817 119 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 FGF6P10767 208 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 GNLYP22749 145 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 SPINK13Q1W4C9 94 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 BOD1L2Q8IYS8 172 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 C10orf91Q5T1B1 145 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 PRSS57Q6UWY2 283 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 SLX1AQ9BQ83 275 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 PLXNA1Q9UIW2 1896 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 GREB1Q4ZG55 1949 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 SIVA1O15304 175 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 IGLL1P15814 213 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 DEFB121Q5J5C9 76 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 C8orf49Q96NF6 230 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 XCL2Q9UBD3 114 aa10.58□□□□□ -0.72
CSPG4P11-201ENST00000560634 CDKN1BP46527 198 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 Q6ZWC4 215 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 C20orf78Q9BR46 151 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 C8orf86Q6ZUL3 223 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 GPR179Q6PRD1 2367 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 A0A1B0GUS0 222 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 H3BRN7 92 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 K7EM74 188 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 TRAV13-2A0A0B4J235 113 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 IGHV1-69DA0A0B4J2H0 117 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 LINC01619G3V211 115 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 IGHV1-69P01742 117 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 PFN2P35080 140 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 NKAPP1Q8N9T2 125 aa10.57□□□□□ -0.72
CSPG4P11-201ENST00000560634 DAD1P61803 113 aa10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 IFITM1P13164 125 aa10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 HOXD3P31249 432 aaPredicted RBP10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 SIGLEC8Q9NYZ4 499 aa10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 MRPL35Q9NZE8 188 aaKnown RBP10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 HAMPP81172 84 aa10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 ZNF726P1Q15940 193 aa10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 CITED1Q99966 193 aa10.56□□□□□ -0.72
CSPG4P11-201ENST00000560634 BVES-AS1Q5T3Y7 98 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 MORN5Q5VZ52 161 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 ATP6V0BQ99437 205 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 PSME4Q14997 1843 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 LY6HO94772 140 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 AZU1P20160 251 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 HLA-DMBP28068 263 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 ANXA2RQ3ZCQ2 193 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 SUMO4Q6EEV6 95 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 A0A1W2PPM0 123 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 F5H768 121 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 IGKV1-39P01597 117 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 IGKV1D-39P04432 117 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 ZNRF2Q8NHG8 242 aa10.55□□□□□ -0.72
CSPG4P11-201ENST00000560634 NPSP0C0P6 89 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 HERVK_113P63121 156 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 PHF3Q92576 2039 aaKnown RBP10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 K7EMI3 77 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 KLF5Q13887 457 aaPredicted RBP10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 J3QQQ9 107 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 PDCD11Q14690 1871 aaKnown RBP10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 NYNRINQ9P2P1 1898 aaKnown RBP10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 LOXP28300 417 aaPredicted RBP10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 WT1-ASQ06250 92 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 POU2AF1Q16633 256 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 C17orf58Q2M2W7 97 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 THAP8Q8NA92 274 aa10.54□□□□□ -0.72
CSPG4P11-201ENST00000560634 GAGE12HA6NDE8 117 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 CEND1Q8N111 149 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 DOCK11Q5JSL3 2073 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 TEX36Q5VZQ5 186 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 E9PQ18 207 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 KLK9Q9UKQ9 250 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 IGHV2-70DA0A0C4DH43 119 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 G3V318 75 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 NPYP01303 97 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 DSCR8Q96T75 97 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 ZNRD1Q9P1U0 126 aa10.53□□□□□ -0.72
CSPG4P11-201ENST00000560634 TRACP01848 142 aa10.52□□□□□ -0.72
CSPG4P11-201ENST00000560634 TCTEX1D4Q5JR98 221 aa10.52□□□□□ -0.72
CSPG4P11-201ENST00000560634 Q6ZR03 302 aa10.52□□□□□ -0.72
CSPG4P11-201ENST00000560634 SHANK1Q9Y566 2161 aa10.52□□□□□ -0.73
CSPG4P11-201ENST00000560634 IGLC1P0CG04 106 aa10.52□□□□□ -0.73
CSPG4P11-201ENST00000560634 RMI2Q96E14 147 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms