RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ASCL5Q7RTU5 278 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 TMUB1Q9BVT8 246 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 CDIP1Q9H305 208 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 ZNF492Q9P255 531 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 VPREB3Q9UKI3 123 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 A1L4Q6 167 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 A4D1N5 150 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 M0R3E3 92 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 CRYGBP07316 175 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 SMIM13P0DJ93 91 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 PRR30Q53SZ7 412 aaPredicted RBP8.94□□□□□ -0.98
CUX1-218ENST00000560541 CT83Q5H943 113 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 GFRALQ6UXV0 394 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 C8orf31Q8N9H6 132 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 RPEQ96AT9 228 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 TM2D2Q9BX73 214 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 MAP1LC3CQ9BXW4 147 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 OTORQ9NRC9 128 aa8.94□□□□□ -0.98
CUX1-218ENST00000560541 ZNF785A8K8V0 405 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 BUB1B-PAK6H3BSN5 160 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 IGKV1-17P01599 117 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 BCL6BQ8N143 479 aaPredicted RBP8.93□□□□□ -0.98
CUX1-218ENST00000560541 TMSB15BA0A087X1C1 80 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 SHISA9B4DS77 424 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 IGLV1-47P01700 117 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 Q6ZUT4 128 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 SPXQ9BT56 116 aa8.93□□□□□ -0.98
CUX1-218ENST00000560541 CHCHD1Q96BP2 118 aaKnown RBP8.92□□□□□ -0.98
CUX1-218ENST00000560541 MS4A6AQ9H2W1 248 aa8.92□□□□□ -0.98
CUX1-218ENST00000560541 I3L2K1 104 aa8.92□□□□□ -0.98
CUX1-218ENST00000560541 APOHP02749 345 aaPredicted RBP8.92□□□□□ -0.98
CUX1-218ENST00000560541 PVRIGQ6DKI7 326 aa8.92□□□□□ -0.98
CUX1-218ENST00000560541 C1RLQ9NZP8 487 aa8.92□□□□□ -0.98
CUX1-218ENST00000560541 SOX21Q9Y651 276 aaPredicted RBP8.92□□□□□ -0.98
CUX1-218ENST00000560541 NPIPB6E9PJ23 425 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 LY6HO94772 140 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 APOMO95445 188 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 NCR2O95944 276 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 NMUP48645 174 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 KIR2DL4Q99706 377 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 GFRA4Q9GZZ7 299 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 NGBQ9NPG2 151 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 KAAG1Q9UBP8 84 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 CRXO43186 299 aaPredicted RBP8.91□□□□□ -0.98
CUX1-218ENST00000560541 IL4P05112 153 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 FXYD2P54710 66 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 ONECUT1Q9UBC0 465 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 LOC389332A0A1B0GUA5 103 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 A0A1B0GUT8 65 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 FHL3Q13643 280 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 FAM162BQ5T6X4 162 aa8.91□□□□□ -0.98
CUX1-218ENST00000560541 NHP2Q9NX24 153 aaKnown RBP8.91□□□□□ -0.98
CUX1-218ENST00000560541 GAGE12JA6NER3 117 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 HAX1O00165 279 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 TIMM23O14925 209 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 GAGE7O76087 117 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 FAM106CPP0CH98 169 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 GAGE12FP0CL80 117 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 GAGE12GP0CL81 117 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 GAGE12IP0CL82 117 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 FXYD7P58549 80 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 GAGE4Q13068 117 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 FAM106AQ4KMX7 169 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 PCP2Q8IVA1 136 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 TTC9CQ8N5M4 171 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 C8orf49Q96NF6 230 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 MUC6Q6W4X9 2439 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 TRBV19A0A075B6N1 114 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 K7EIM0 57 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 OVOL3O00110 214 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 NHLRC4P0CG21 123 aaPredicted RBP8.9□□□□□ -0.98
CUX1-218ENST00000560541 CRIP1P50238 77 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 GAGE13Q4V321 117 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 LCNL1Q6ZST4 164 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 PRELID3AQ96N28 172 aa8.9□□□□□ -0.98
CUX1-218ENST00000560541 ZFAND6Q6FIF0 208 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 TEX29Q8N6K0 151 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 Q8NA96 180 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 SCNM1Q9BWG6 230 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 AP5S1Q9NUS5 200 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 SPTBN1Q01082 2364 aaKnown RBP8.89□□□□□ -0.99
CUX1-218ENST00000560541 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.89□□□□□ -0.99
CUX1-218ENST00000560541 F8W1H4 67 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 IGHV3-23P01764 117 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 OR5AL1P0C617 328 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 FGF6P10767 208 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 SIGLEC15Q6ZMC9 328 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 LINC01560Q8TB33 94 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 TTTY13Q9BZ97 58 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 ATRXP46100 2492 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 LOXL1Q08397 574 aaPredicted RBP8.89□□□□□ -0.99
CUX1-218ENST00000560541 PRSS3P2Q8NHM4 247 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 RNF125Q96EQ8 232 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 SHANK2-AS3Q9BTD1 123 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 TMEM14CQ9P0S9 112 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 AKAP6Q13023 2319 aa8.89□□□□□ -0.99
CUX1-218ENST00000560541 IGHV3OR16-8A0A075B7F1 116 aa8.88□□□□□ -0.99
CUX1-218ENST00000560541 ZNF491Q8N8L2 437 aa8.88□□□□□ -0.99
CUX1-218ENST00000560541 OR8A1Q8NGG7 326 aa8.88□□□□□ -0.99
CUX1-218ENST00000560541 TMEM213A2RRL7 107 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms