RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 TIRAPP58753 221 aa11.21□□□□□ -0.62
CSPG4P12-202ENST00000559989 CLPSL2Q6UWE3 100 aa11.21□□□□□ -0.62
CSPG4P12-202ENST00000559989 COX7B2Q8TF08 81 aa11.21□□□□□ -0.62
CSPG4P12-202ENST00000559989 TNRC6BQ9UPQ9 1833 aaKnown RBP11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 SHANK3Q9BYB0 1731 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 LYNX1G3V0Z9 82 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 LYNX1P0DP58 116 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 TFF1P04155 84 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 KLK9Q9UKQ9 250 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 ZNF134P52741 427 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 V9GYY9 64 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGHV4-4A0A075B6R2 117 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGHV3-38A0A0C4DH36 116 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 ITGBL1O95965 494 aaPredicted RBP11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 HGFACQ04756 655 aa11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 MRPL36Q9P0J6 103 aaKnown RBP11.2□□□□□ -0.62
CSPG4P12-202ENST00000559989 C10orf55Q5SWW7 151 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 TIMM17AQ99595 171 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 LINC01620Q4KN68 170 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGKV3D-7A0A0C4DH55 119 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 E9PLN8 166 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 AKAP6Q13023 2319 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 H0YGX0 51 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 ETV2O00321 342 aaPredicted RBP11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 CFC1BP0CG36 223 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 CFC1P0CG37 223 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 PAX9P55771 341 aa11.19□□□□□ -0.62
CSPG4P12-202ENST00000559989 C4orf51C9J302 202 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 TIAF1O95411 115 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 DYNAPQ8N1N2 210 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 DEFB125Q8N687 156 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 PCNX2A6NKB5 2137 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 ZFP2Q6ZN57 461 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 CYTL1Q9NRR1 136 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 ADAMTSL3P82987 1691 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 SHISA3A0PJX4 238 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGKV4-1P06312 121 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 K7EMI3 77 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 XCL1P47992 114 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 SMIM27A0A1W2PRY6 76 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 IL15RAQ13261 267 aa11.18□□□□□ -0.62
CSPG4P12-202ENST00000559989 TRAV26-2A0A0B4J265 109 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 RHOHQ15669 191 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 C20orf78Q9BR46 151 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 MRPL35Q9NZE8 188 aaKnown RBP11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGKV1OR2-108A0A075B7D4 117 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 ATP5G1P05496 136 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 ZCCHC24Q8N2G6 241 aaKnown RBP11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 PYGO2Q9BRQ0 406 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 TAF1LQ8IZX4 1826 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 TRAV3A0A0B4J244 114 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 RNF183Q96D59 192 aa11.17□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGKV1-39P01597 117 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGKV1D-39P04432 117 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 GATA4P43694 442 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 LINC00114Q6XXX2 140 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 ZNF837Q96EG3 531 aaPredicted RBP11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 GLI3P10071 1580 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 SIGLEC8Q9NYZ4 499 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 SRRM5B3KS81 715 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 IGLL5B9A064 214 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 UBE2AP49459 152 aa11.16□□□□□ -0.62
CSPG4P12-202ENST00000559989 FOXE3Q13461 319 aa11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 ZNF493Q6ZR52 646 aa11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 MST1LQ2TV78 715 aa11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 OPRPNQ99935 248 aaPredicted RBP11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 REG4Q9BYZ8 158 aa11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 ICOSQ9Y6W8 199 aa11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 PLXND1Q9Y4D7 1925 aa11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 ZNF883P0CG24 379 aa11.15□□□□□ -0.62
CSPG4P12-202ENST00000559989 H0Y9J4 135 aa11.15□□□□□ -0.63
CSPG4P12-202ENST00000559989 GATA3P23771 443 aa11.15□□□□□ -0.63
CSPG4P12-202ENST00000559989 SPRR3Q9UBC9 169 aa11.15□□□□□ -0.63
CSPG4P12-202ENST00000559989 BRD3OSQ6XYD6 125 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 IGKV1-9A0A0C4DH69 117 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 FAM240AA0A1B0GVK7 77 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 CSRP2Q16527 193 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 JMJD7-PLA2G4BH0Y9G9 81 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 C15orf62A8K5M9 175 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 FGFBP3Q8TAT2 258 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 SP7Q8TDD2 431 aaPredicted RBP11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 Q9H8V8 135 aa11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 SPANXB1Q9NS25 103 aaPredicted RBP11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 DUX4L9Q6RFH8 374 aaPredicted RBP11.14□□□□□ -0.63
CSPG4P12-202ENST00000559989 OVOL3O00110 214 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 FOXF2Q12947 444 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 C8orf86Q6ZUL3 223 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 MPLKIPQ8TAP9 179 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 IGLL1P15814 213 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 POLEQ07864 2286 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 ZFP36L1Q07352 338 aaKnown RBP11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 Q6ZVH6 145 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 PTPRZ1P23471 2315 aaPredicted RBP11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 CACNA1IQ9P0X4 2223 aa11.13□□□□□ -0.63
CSPG4P12-202ENST00000559989 LHFPL1Q86WI0 220 aa11.12□□□□□ -0.63
CSPG4P12-202ENST00000559989 TRAV4A0A0B4J268 109 aa11.12□□□□□ -0.63
CSPG4P12-202ENST00000559989 LTAP01374 205 aa11.12□□□□□ -0.63
CSPG4P12-202ENST00000559989 TRBV12-3P01733 135 aa11.12□□□□□ -0.63
CSPG4P12-202ENST00000559989 ANKRD39Q53RE8 183 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms