RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 SPRR2DP22532 72 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 CAPZBP47756 277 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 INSL3P51460 131 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 POU6F1Q14863 301 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 TMEM97Q5BJF2 176 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 LINC00269Q8N2A0 174 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 NAT14Q8WUY8 206 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 OR2J1Q9GZK6 312 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 NMNAT1Q9HAN9 279 aaPredicted RBP-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 DCHS2Q6V1P9 2916 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 PIK3C2GO75747 1445 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 A0A096LNT2 108 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 TMEM30CPA0ZSE6 113 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 FAM25EA8MYX2 175 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 H7BYZ3 331 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 TPST1O60507 370 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 NDUFC2O95298 119 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 DEFB109BQ30KR1 87 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 CROCCP2Q86T23 111 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 TCTEX1D1Q8N7M0 179 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 CIB3Q96Q77 187 aaPredicted RBP-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 MYLKQ15746 1914 aa-0.79□□□□□ -2.54
VPS13C-205ENST00000558088 NBEAL1Q6ZS30 2694 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 SOGA1O94964 1423 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 ADGRL3Q9HAR2 1447 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 CST7O76096 145 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 TRGC2P03986 189 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 FABP4P15090 132 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 CEBPGP53567 150 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 NCALDP61601 193 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 HBBP68871 147 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 MRPS36P82909 103 aaKnown RBP-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 COTL1Q14019 142 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 OR10X1Q8NGY0 326 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 NEK7Q8TDX7 302 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 COA4Q9NYJ1 87 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 ASB4Q9Y574 426 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 ABCA1O95477 2261 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 NUP98P52948 1817 aa-0.8□□□□□ -2.54
VPS13C-205ENST00000558088 AKAP6Q13023 2319 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 PCLOQ9Y6V0 5065 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 CADP27708 2225 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 TENM2Q9NT68 2774 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 TANC1Q9C0D5 1861 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 ACANP16112 2415 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 TRAV5A0A0B4J249 113 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 M0QX08 132 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 TRACP01848 142 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 CCKP06307 115 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 OGNP20774 298 aaKnown RBP-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 NDUFA6P56556 154 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 SPAG11BQ08648 103 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 LIN52Q52LA3 116 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 LYPD5Q6UWN5 251 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 OR8J3Q8NGG0 315 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 OR8J2Q8NGG1 315 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 TMEM141Q96I45 108 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 C9orf16Q9BUW7 83 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 PKD1L1Q8TDX9 2849 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 DOCK4Q8N1I0 1966 aa-0.81□□□□□ -2.54
VPS13C-205ENST00000558088 MAP1BP46821 2468 aaKnown RBP-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 FAT1Q14517 4588 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 MCRIP1C9JLW8 97 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 BCL2P10415 239 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 ITGB3BPQ13352 177 aaPredicted RBP-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 SCGB2B2Q4G0G5 96 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 Q5XG85 94 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 PPP1R14BQ96C90 147 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 PAIP2Q9BPZ3 127 aaKnown RBP-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 BPESC1Q9GZL8 116 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 ATG5Q9H1Y0 275 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 CCDC144AA2RUR9 1427 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 ZNF292O60281 2723 aa-0.82□□□□□ -2.54
VPS13C-205ENST00000558088 DOPEY2Q9Y3R5 2298 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 TRPM7Q96QT4 1865 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 TMEM189A5PLL7 270 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 RIIAD1A6NNX1 92 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 G3V2T6 193 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 M0R3E3 92 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 AIPO00170 330 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 CDC42EP2O14613 210 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 SERPINA1P01009 418 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 IGF2P01344 180 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 C1QBP02746 253 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 PPP1R2P41236 205 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 RPL35P42766 123 aaKnown RBP-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 GNG5P63218 68 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 KRTAP19-8Q3LI54 63 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 UNQ5815/PRO19632Q6UWF5 114 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 IZUMO2Q6UXV1 221 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 GPX7Q96SL4 187 aaPredicted RBP-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 PHB2Q99623 299 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 SPAG17Q6Q759 2223 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 ESPL1Q14674 2120 aa-0.83□□□□□ -2.54
VPS13C-205ENST00000558088 LPAP08519 4548 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 CTTNBP2Q8WZ74 1663 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 KIF1BO60333 1816 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 APOA2P02652 100 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 DNAJB13P59910 316 aa-0.84□□□□□ -2.54
VPS13C-205ENST00000558088 DEFB132Q7Z7B7 95 aa-0.84□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms