RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 RBAKDNA6NC62 111 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 FABP5P3A8MUU1 101 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 OOSP1A8MZH6 123 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 F8W735 103 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-232ENST00000557487 H3BUT2 72 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 IGKV2D-40P01614 121 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-232ENST00000557487 FOXE3Q13461 319 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 CCDC144NLQ6NUI1 221 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 A0A1W2PPM0 123 aa12.69□□□□□ -0.38
SHMT2-232ENST00000557487 ATP5LO75964 103 aa12.69□□□□□ -0.38
SHMT2-232ENST00000557487 ODF3BA8MYP8 253 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 SMIM17P0DL12 118 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 NMUP48645 174 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 RNF185Q96GF1 192 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 JMJD8Q96S16 334 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 BSNQ9UPA5 3926 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 TLN1Q9Y490 2541 aaKnown RBP12.68□□□□□ -0.38
SHMT2-232ENST00000557487 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-232ENST00000557487 FABP2P12104 132 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 PLA2G2AP14555 144 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 EVI2AP22794 236 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 PRB3Q04118 309 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-232ENST00000557487 NEGR1Q7Z3B1 354 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 MEGF9Q9H1U4 602 aa12.68□□□□□ -0.38
SHMT2-232ENST00000557487 G3V4G9 280 aa12.67□□□□□ -0.38
SHMT2-232ENST00000557487 SMIM13P0DJ93 91 aa12.67□□□□□ -0.38
SHMT2-232ENST00000557487 PRTN3P24158 256 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 SRSF1Q07955 248 aaKnown RBP eCLIP12.66□□□□□ -0.38
SHMT2-232ENST00000557487 ODF1Q14990 250 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 ZNF672Q499Z4 452 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-232ENST00000557487 KLF17Q5JT82 389 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-232ENST00000557487 PRSS47A8MTI9 375 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 LEPP41159 167 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 ZNF80P51504 273 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-232ENST00000557487 PCP2Q8IVA1 136 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 BCL6BQ8N143 479 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-232ENST00000557487 Q8N8P6 123 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 TIMD4Q96H15 378 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 DKK2Q9UBU2 259 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 SH3BGRL2Q9UJC5 107 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 HILPDAQ9Y5L2 63 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 SPCS1Q9Y6A9 102 aa12.66□□□□□ -0.38
SHMT2-232ENST00000557487 LYNX1G3V0Z9 82 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 SMKR1H3BMG3 65 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 TNFRSF6BO95407 300 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 ORM1P02763 201 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 LYNX1P0DP58 116 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 EBI3Q14213 229 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 HES1Q14469 280 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 C1orf122Q6ZSJ8 110 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 PSMG3-AS1Q96PY0 264 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 VGLL1Q99990 258 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 VKORC1Q9BQB6 163 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 SLC50A1Q9BRV3 221 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 SMAD5-AS1Q9Y6J3 95 aa12.65□□□□□ -0.38
SHMT2-232ENST00000557487 ZGRF1Q86YA3 2104 aa12.65□□□□□ -0.39
SHMT2-232ENST00000557487 PRRC2CQ9Y520 2896 aaKnown RBP12.65□□□□□ -0.39
SHMT2-232ENST00000557487 IGKCP01834 107 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 IGHG4P01861 327 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 CTSGP08311 255 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 KLK9Q2XQG4 91 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 MINOS1Q5TGZ0 78 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 PRSS57Q6UWY2 283 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 Q8N6K4 173 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 KLK9Q9UKQ9 250 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 HHLA3Q9XRX5 114 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 MINOS1-NBL1R4GNA1 71 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 SMG1Q96Q15 3661 aaKnown RBP12.64□□□□□ -0.39
SHMT2-232ENST00000557487 J3QKU1 62 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 PRR30Q53SZ7 412 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-232ENST00000557487 ZNF575Q86XF7 245 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 Q8TAT8 98 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 S4R3C0 116 aa12.64□□□□□ -0.39
SHMT2-232ENST00000557487 DPM2O94777 84 aa12.63□□□□□ -0.39
SHMT2-232ENST00000557487 TAL2Q16559 108 aa12.63□□□□□ -0.39
SHMT2-232ENST00000557487 SAMD5Q5TGI4 173 aa12.63□□□□□ -0.39
SHMT2-232ENST00000557487 MRPL53Q96EL3 112 aaKnown RBP12.63□□□□□ -0.39
SHMT2-232ENST00000557487 HIF1ANQ9NWT6 349 aa12.63□□□□□ -0.39
SHMT2-232ENST00000557487 SPTA1P02549 2419 aa12.63□□□□□ -0.39
SHMT2-232ENST00000557487 PRSS1P07477 247 aa12.62□□□□□ -0.39
SHMT2-232ENST00000557487 FXYD7P58549 80 aa12.62□□□□□ -0.39
SHMT2-232ENST00000557487 SAP30O75446 220 aa12.62□□□□□ -0.39
SHMT2-232ENST00000557487 FBXL19-AS1Q494R0 122 aa12.62□□□□□ -0.39
SHMT2-232ENST00000557487 CHAC1Q9BUX1 264 aa12.62□□□□□ -0.39
SHMT2-232ENST00000557487 TM2D2Q9BX73 214 aa12.62□□□□□ -0.39
SHMT2-232ENST00000557487 NDPQ00604 133 aa12.61□□□□□ -0.39
SHMT2-232ENST00000557487 KALRNO60229 2985 aa12.61□□□□□ -0.39
SHMT2-232ENST00000557487 ABCA1O95477 2261 aa12.61□□□□□ -0.39
SHMT2-232ENST00000557487 IL17RELQ6ZVW7 336 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 RAB37Q96AX2 223 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 C18orf15Q96N68 181 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 CFAP46Q8IYW2 2715 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 IGLV2-18A0A075B6J9 118 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 NCBP2LA6PVI3 153 aaKnown RBP12.6□□□□□ -0.39
SHMT2-232ENST00000557487 GCSHP23434 173 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 DTX2Q86UW9 622 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 DYNAPQ8N1N2 210 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 FAM110DQ8TAY7 271 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-232ENST00000557487 MSRB1Q9NZV6 116 aa12.6□□□□□ -0.39
SHMT2-232ENST00000557487 IGHV4-4A0A075B6R2 117 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms