RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 IFNA7P01567 189 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 RNASE2P10153 161 aaKnown RBP2.42□□□□□ -2.02
LIMA1-206ENST00000550611 IL7P13232 177 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 HTN3P15516 51 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 ZNF25P17030 456 aaPredicted RBP2.42□□□□□ -2.02
LIMA1-206ENST00000550611 FXYD7P58549 80 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 DSCR10P59022 87 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 FXYD4P59646 89 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 DEFB1P60022 68 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 RAB5BP61020 215 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 YPEL3P61236 119 aaPredicted RBP2.42□□□□□ -2.02
LIMA1-206ENST00000550611 ERHP84090 104 aaKnown RBP2.42□□□□□ -2.02
LIMA1-206ENST00000550611 GAMTQ14353 236 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 ZNF79Q15937 498 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 DNLZQ5SXM8 178 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 ZC2HC1BQ5TFG8 222 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 LPCAT3Q6P1A2 487 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 PRSS48Q7RTY5 328 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 SFT2D1Q8WV19 159 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 DEDD2Q8WXF8 326 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 PINX1Q96BK5 328 aaKnown RBP2.42□□□□□ -2.02
LIMA1-206ENST00000550611 SLC25A38Q96DW6 304 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 PRRT1Q99946 306 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 VPS25Q9BRG1 176 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 UPK3BQ9BT76 320 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 MIXL1Q9H2W2 232 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 Q9H3A6 140 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 AUNIPQ9H7T9 357 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 NRN1Q9NPD7 142 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 SCN3BQ9NY72 215 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 CRCT1Q9UGL9 99 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 RAB26Q9ULW5 256 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 SSR3Q9UNL2 185 aa2.42□□□□□ -2.02
LIMA1-206ENST00000550611 NACAE9PAV3 2078 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 IGHV3OR16-12A0A075B7B8 117 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 TRAV30A0A087WSZ9 112 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 FABP12A6NFH5 140 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 FBLL1A6NHQ2 334 aaKnown RBP2.41□□□□□ -2.02
LIMA1-206ENST00000550611 LYRM9A8MSI8 78 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 CORTO00230 105 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 GPR31O00270 319 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 ARPC5O15511 151 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 DLEU1O43261 78 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 IGKV1-5P01602 117 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 HBE1P02100 147 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 PRM2P04554 102 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 METTL15P1P0C7V9 234 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 IGLC1P0CG04 106 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 MYL9P24844 172 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 TSPOP30536 169 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 RORCP51449 518 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 CCR6P51684 374 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 CCL18P55774 89 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 DAD1P61803 113 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 PKIAP61925 76 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 SNRPD3P62318 126 aaKnown RBP2.41□□□□□ -2.02
LIMA1-206ENST00000550611 PSG9Q00887 426 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 DHODHQ02127 395 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 RRN3P1Q2M238 152 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 TIGITQ495A1 244 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 ADAMTSL4-AS1Q5T5F5 129 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 SPATA31B1PQ5VZV4 182 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 C22orf42Q6IC83 251 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 PRSS54Q6PEW0 395 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 AMTNQ6UX39 209 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 FOXI2Q6ZQN5 318 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 SSX7Q7RTT5 188 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 H2BFWTQ7Z2G1 175 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 COMMD7Q86VX2 200 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 ZFP82Q8N141 532 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 OR6F1Q8NGZ6 308 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 OR4A16Q8NH70 328 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 TERB2Q8NHR7 220 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 COQ8AQ8NI60 647 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 ZFAND1Q8TCF1 268 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 GPX8Q8TED1 209 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 RBPMSQ93062 196 aaKnown RBP2.41□□□□□ -2.02
LIMA1-206ENST00000550611 TMEM230Q96A57 120 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 SMIM12Q96EX1 92 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 C14orf144Q96I85 54 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 LITAFQ99732 161 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 FXYD6Q9H0Q3 95 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 SLC35B3Q9H1N7 401 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 NDUFB11Q9NX14 153 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 GSKIPQ9P0R6 139 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 SCP2D1Q9UJQ7 156 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 TPRKBQ9Y3C4 175 aa2.41□□□□□ -2.02
LIMA1-206ENST00000550611 A0A0G2JRQ6 117 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 A0A0J9YX75 114 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 A0A1B0GW15 77 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 C9orf170A2RU37 121 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 F8WDY8 70 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 CRXO43186 299 aaPredicted RBP2.4□□□□□ -2.03
LIMA1-206ENST00000550611 EIF3GO75821 320 aaKnown RBP eCLIP2.4□□□□□ -2.03
LIMA1-206ENST00000550611 RLN2P04090 185 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 ATP5G1P05496 136 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 SCGB1A1P11684 91 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 ELK1P19419 428 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 UCP1P25874 307 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 SNCAP37840 140 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms