RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	KLLN	B2CW77	178 aa		12.07	□□□□□ -0.48
CHMP1A-205	ENST00000548650	DAZ2	Q13117	558 aa	Known RBP	12.07	□□□□□ -0.48
CHMP1A-205	ENST00000548650	ERCC8	Q13216	396 aa		12.07	□□□□□ -0.48
CHMP1A-205	ENST00000548650	PDE6H	Q13956	83 aa		12.07	□□□□□ -0.48
CHMP1A-205	ENST00000548650		Q6ZTI0	123 aa		12.07	□□□□□ -0.48
CHMP1A-205	ENST00000548650	C11orf72	Q8NBR9	251 aa		12.07	□□□□□ -0.48
CHMP1A-205	ENST00000548650	C7orf71	A4D174	169 aa		12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650		H3BNG1	76 aa		12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650	MPDU1	O75352	247 aa		12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650	SLC25A5	P05141	298 aa	Known RBP	12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650	HIST1H1E	P10412	219 aa	Known RBP	12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650	ATP6V1F	Q16864	119 aa		12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650	SLC25A2	Q9BXI2	301 aa		12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650	LRP1B	Q9NZR2	4599 aa		12.06	□□□□□ -0.48
CHMP1A-205	ENST00000548650	BTN1A1	Q13410	526 aa		12.05	□□□□□ -0.48
CHMP1A-205	ENST00000548650	EXOC3-AS1	Q8N2X6	119 aa		12.05	□□□□□ -0.48
CHMP1A-205	ENST00000548650	ZNF680	Q8NEM1	530 aa		12.05	□□□□□ -0.48
CHMP1A-205	ENST00000548650	LINC00467	Q9BRT7	94 aa		12.05	□□□□□ -0.48
CHMP1A-205	ENST00000548650	UPK3B	Q9BT76	320 aa		12.05	□□□□□ -0.48
CHMP1A-205	ENST00000548650		Q9H8V8	135 aa		12.05	□□□□□ -0.48
CHMP1A-205	ENST00000548650	PRELID1	Q9Y255	219 aa		12.05	□□□□□ -0.48
CHMP1A-205	ENST00000548650	C16orf90	A8MZG2	172 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	DEFA1	P59665	94 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	DEFA3	P59666	94 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	CD300C	Q08708	224 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	THAP6	Q8TBB0	222 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	BLNK	Q8WV28	456 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	FAM167A-AS1	Q96KT0	104 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	C18orf15	Q96N68	181 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	AGPAT4-IT1	Q9H0P7	198 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650		Q9H3A6	140 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	GSN-AS1	Q9NRJ2	163 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	TIMM9	Q9Y5J7	89 aa		12.04	□□□□□ -0.48
CHMP1A-205	ENST00000548650	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	INMT-MINDY4	F8WBC2	141 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	ZNF324	O75467	553 aa	Predicted RBP	12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	IGKV2D-40	P01614	121 aa	Predicted RBP	12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	CRISP2	P16562	243 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	NHLH2	Q02577	135 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	ESRG	Q1W209	222 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	TTC32	Q5I0X7	151 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	PRR9	Q5T870	116 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	C9orf47	Q6ZRZ4	202 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	OR5C1	Q8NGR4	320 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	LINC00477	Q96M19	166 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	KRTAP4-5	Q9BYR2	181 aa		12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	MRPS16	Q9Y3D3	137 aa	Known RBP	12.03	□□□□□ -0.48
CHMP1A-205	ENST00000548650	ICAM4	Q14773	271 aa		12.02	□□□□□ -0.49
CHMP1A-205	ENST00000548650	ANXA2R	Q3ZCQ2	193 aa		12.02	□□□□□ -0.49
CHMP1A-205	ENST00000548650	MIR17HG	Q75NE6	70 aa		12.02	□□□□□ -0.49
CHMP1A-205	ENST00000548650	EIF4E3	Q8N5X7	224 aa	Known RBP	12.02	□□□□□ -0.49
CHMP1A-205	ENST00000548650	ZFAND2A	Q8N6M9	145 aa		12.02	□□□□□ -0.49
CHMP1A-205	ENST00000548650	VSIG2	Q96IQ7	327 aa		12.02	□□□□□ -0.49
CHMP1A-205	ENST00000548650	AAMDC	Q9H7C9	122 aa		12.02	□□□□□ -0.49
CHMP1A-205	ENST00000548650	SIX6	O95475	246 aa		12.01	□□□□□ -0.49
CHMP1A-205	ENST00000548650	TCL1A	P56279	114 aa		12.01	□□□□□ -0.49
CHMP1A-205	ENST00000548650	FAM122C	Q6P4D5	195 aa		12.01	□□□□□ -0.49
CHMP1A-205	ENST00000548650	OR5AC2	Q9NZP5	309 aa		12.01	□□□□□ -0.49
CHMP1A-205	ENST00000548650	TRGV2	A0A075B6R0	118 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650		A0A096LPF7	62 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	TRGV1	A0A0A0MS02	117 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650		A0A1W2PPQ1	181 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650		H0YIZ8	118 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	SPINK4	O60575	86 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	PRAF2	O60831	178 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	CDK2AP2	O75956	126 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	NMB	P08949	121 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	RNASE4	P34096	147 aa	Known RBP	12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	FXYD5	Q96DB9	178 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	PHYHIPL	Q96FC7	376 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	VGLL1	Q99990	258 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	MARVELD1	Q9BSK0	173 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	NMES1	Q9C002	83 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	FUT9	Q9Y231	359 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650	KLF12	Q9Y4X4	402 aa		12	□□□□□ -0.49
CHMP1A-205	ENST00000548650		E5RGE8	158 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	GPX1	P07203	203 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	LRRC37A5P	Q49AS3	106 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	IBA57	Q5T440	356 aa	Known RBP	11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	TMEM78	Q5T7P6	136 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650		Q6ZQT7	251 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	MRPL32	Q9BYC8	188 aa	Known RBP	11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	WDR61	Q9GZS3	305 aa	Known RBP	11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	SLC25A31	Q9H0C2	315 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	KCNIP2	Q9NS61	270 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	TP53TG3	Q9ULZ0	132 aa		11.99	□□□□□ -0.49
CHMP1A-205	ENST00000548650	OR10J4	P0C629	311 aa		11.98	□□□□□ -0.49
CHMP1A-205	ENST00000548650	NBEAP1	P0C6P0	100 aa		11.98	□□□□□ -0.49
CHMP1A-205	ENST00000548650		Q8TAT8	98 aa		11.98	□□□□□ -0.49
CHMP1A-205	ENST00000548650	OR51M1	Q9H341	326 aa		11.98	□□□□□ -0.49
CHMP1A-205	ENST00000548650	ZNF492	Q9P255	531 aa		11.98	□□□□□ -0.49
CHMP1A-205	ENST00000548650	APOB	P04114	4563 aa	Known RBP	11.98	□□□□□ -0.49
CHMP1A-205	ENST00000548650	RGS13	O14921	159 aa		11.97	□□□□□ -0.49
CHMP1A-205	ENST00000548650	SPATA12	Q7Z6I5	190 aa		11.97	□□□□□ -0.49
CHMP1A-205	ENST00000548650	ST6GAL2	Q96JF0	529 aa		11.97	□□□□□ -0.49
CHMP1A-205	ENST00000548650	PAXX	Q9BUH6	204 aa		11.97	□□□□□ -0.49
CHMP1A-205	ENST00000548650	MRPL16	Q9NX20	251 aa	Known RBP	11.97	□□□□□ -0.49
CHMP1A-205	ENST00000548650	IGHV1OR15-1	A0A075B7D0	117 aa		11.96	□□□□□ -0.49
CHMP1A-205	ENST00000548650	H2BFS	P57053	126 aa		11.96	□□□□□ -0.49
CHMP1A-205	ENST00000548650	TRBV7-9	A0A0J9YWB2	115 aa		11.95	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms