RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 IGKV2-40A0A087WW87 121 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-213ENST00000546820 F6UZH7 168 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 IGKV2D-40P01614 121 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-213ENST00000546820 CT45A10P0DMU9 189 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 ZNF138P52744 262 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 UBE2G2P60604 165 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 BLOC1S1P78537 153 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 CST9LP1Q5W188 147 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 CSNK1G2-AS1Q8NCQ2 148 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 VGLL1Q99990 258 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 EPDR1Q9UM22 224 aa10.04□□□□□ -0.8
PTCH1-213ENST00000546820 A0A1B0GV50 99 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 FAM74A7A6NL05 159 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 M0R2Z0 102 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 INSP01308 110 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 NMBP08949 121 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 GOLT1AQ6ZVE7 132 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 TMEM208Q9BTX3 173 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 ZNF492Q9P255 531 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 LENEPQ9Y5L5 61 aa10.03□□□□□ -0.8
PTCH1-213ENST00000546820 TRBV7-9A0A0J9YWB2 115 aa10.02□□□□□ -0.81
PTCH1-213ENST00000546820 FBLL1A6NHQ2 334 aaKnown RBP10.02□□□□□ -0.81
PTCH1-213ENST00000546820 GGTLC3B5MD39 225 aa10.02□□□□□ -0.81
PTCH1-213ENST00000546820 TCEAL7Q9BRU2 100 aa10.02□□□□□ -0.81
PTCH1-213ENST00000546820 YTHDF2Q9Y5A9 579 aaKnown RBP10.02□□□□□ -0.81
PTCH1-213ENST00000546820 NBEAL2Q6ZNJ1 2754 aa10.02□□□□□ -0.81
PTCH1-213ENST00000546820 IGHV3OR16-12A0A075B7B8 117 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 SMIM9A6NGZ8 99 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 PAGE4O60829 102 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 IFNA1P01562 189 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 TCRAP04437 139 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 GPX1P07203 203 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 MIFP14174 115 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 GNG5P63218 68 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 TMEM256Q8N2U0 113 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 HIST1H2BAQ96A08 127 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 NEU1Q99519 415 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 C20orf144Q9BQM9 153 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 ATG101Q9BSB4 218 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 MANBALQ9NQG1 85 aa10.01□□□□□ -0.81
PTCH1-213ENST00000546820 TRAV12-2A0A075B6T6 113 aa10□□□□□ -0.81
PTCH1-213ENST00000546820 CRXO43186 299 aaPredicted RBP10□□□□□ -0.81
PTCH1-213ENST00000546820 ZNF705AQ6ZN79 300 aaPredicted RBP10□□□□□ -0.81
PTCH1-213ENST00000546820 CYB561D1Q8N8Q1 229 aa10□□□□□ -0.81
PTCH1-213ENST00000546820 FAM19A4Q96LR4 140 aa10□□□□□ -0.81
PTCH1-213ENST00000546820 LINC01587Q99440 93 aa10□□□□□ -0.81
PTCH1-213ENST00000546820 TXNDC17Q9BRA2 123 aa10□□□□□ -0.81
PTCH1-213ENST00000546820 NDFIP1Q9BT67 221 aa10□□□□□ -0.81
PTCH1-213ENST00000546820 GNG13Q9P2W3 67 aa10□□□□□ -0.81
PTCH1-213ENST00000546820 CRISP2P16562 243 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 RNASE4P34096 147 aaKnown RBP9.99□□□□□ -0.81
PTCH1-213ENST00000546820 TAGLN2P37802 199 aaKnown RBP9.99□□□□□ -0.81
PTCH1-213ENST00000546820 CCL20P78556 96 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 PMS2P11Q13670 270 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 TEX261Q6UWH6 196 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 CCDC28AQ8IWP9 274 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 C1orf158Q8N1D5 194 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 NIPSNAP3BQ9BS92 247 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 TGP01266 2768 aa9.99□□□□□ -0.81
PTCH1-213ENST00000546820 C11orf94C9JXX5 98 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 H7BYZ3 331 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 J3KRW8 73 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 PEX7O00628 323 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 RRN3P1Q2M238 152 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 SAPCD1Q5SSQ6 148 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 GFI1BQ5VTD9 330 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 TMEM75Q8N9X5 138 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 WWC2-AS2Q96NR7 200 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 PSG8Q9UQ74 426 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 X6R8D5 127 aa9.98□□□□□ -0.81
PTCH1-213ENST00000546820 PRKDCP78527 4128 aaKnown RBP9.98□□□□□ -0.81
PTCH1-213ENST00000546820 COL7A1Q02388 2944 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 TRAV12-3A0A0B4J271 114 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 A0A0J9YWU9 116 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 C7orf71A4D174 169 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 TMEM189A5PLL7 270 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 KLLNB2CW77 178 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 S100A9P06702 114 aaKnown RBP9.97□□□□□ -0.81
PTCH1-213ENST00000546820 ATP5G3P48201 142 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 TAS2R60P59551 318 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 FLI1Q01543 452 aaPredicted RBP9.97□□□□□ -0.81
PTCH1-213ENST00000546820 ZNF680Q8NEM1 530 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 IL17DQ8TAD2 202 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 Q8TAT8 98 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 TREM1Q9NP99 234 aa9.97□□□□□ -0.81
PTCH1-213ENST00000546820 TRAV8-1A0A0A6YYK1 113 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 IGHV4-28A0A0C4DH34 117 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 HTN1P15515 57 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 UBE2G1P62253 170 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 PRNTQ86SH4 94 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 ZFAND2AQ8N6M9 145 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 FMC1Q96HJ9 113 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 SGK494Q96LW2 274 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 C11orf68Q9H3H3 251 aaKnown RBP9.96□□□□□ -0.82
PTCH1-213ENST00000546820 VAX2Q9UIW0 290 aa9.96□□□□□ -0.82
PTCH1-213ENST00000546820 KIR3DS1Q14943 382 aa9.95□□□□□ -0.82
PTCH1-213ENST00000546820 Q8NAQ8 132 aa9.95□□□□□ -0.82
PTCH1-213ENST00000546820 LYPD6BQ8NI32 183 aa9.95□□□□□ -0.82
PTCH1-213ENST00000546820 LINC00479Q96M42 142 aa9.95□□□□□ -0.82
PTCH1-213ENST00000546820 PYGO2Q9BRQ0 406 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms