RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CLEC19AQ6UXS0 136 aa11.7□□□□□ -0.54
USP28-214ENST00000545540 OR10AG1Q8NH19 301 aa11.7□□□□□ -0.54
USP28-214ENST00000545540 ORAOV1Q8WV07 137 aa11.7□□□□□ -0.54
USP28-214ENST00000545540 IGHG4P01861 327 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 PCP4P48539 62 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 FAM162BQ5T6X4 162 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 ZNF562Q6V9R5 426 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 LY6G5BQ8NDX9 201 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 RAB37Q96AX2 223 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 ZFYVE26Q68DK2 2539 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 CEACAM3P40198 252 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 NMUP48645 174 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 DKK2Q9UBU2 259 aa11.69□□□□□ -0.54
USP28-214ENST00000545540 IGHV7-81A0A0B4J1V7 117 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 TRAV26-2A0A0B4J265 109 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 C16orf54Q6UWD8 224 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 IL17RELQ6ZVW7 336 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 OR11H6Q8NGC7 330 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 FAM231BA6NCW3 169 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 K7EP13 123 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 PRTN3P24158 256 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 FAM104BQ5XKR9 115 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 PET117Q6UWS5 81 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 THYN1Q9P016 225 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 CFAP46Q8IYW2 2715 aa11.68□□□□□ -0.54
USP28-214ENST00000545540 PCP2Q8IVA1 136 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 MYO18BQ8IUG5 2567 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 TRAV8-6A0A0B4J262 113 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 ORMDL3Q8N138 153 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 FER1L6-AS1Q8NA97 138 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 UBTD1Q9HAC8 227 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 NDUFA3O95167 84 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 LY6DQ14210 128 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 LINC01545Q5VT33 79 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 RABAC1Q9UI14 185 aa11.67□□□□□ -0.54
USP28-214ENST00000545540 ATP6V0E1O15342 81 aa11.66□□□□□ -0.54
USP28-214ENST00000545540 ZNF575Q86XF7 245 aa11.66□□□□□ -0.54
USP28-214ENST00000545540 C2orf91Q6ZV80 131 aa11.66□□□□□ -0.54
USP28-214ENST00000545540 NPBQ8NG41 125 aa11.66□□□□□ -0.54
USP28-214ENST00000545540 MSRB2Q9Y3D2 182 aa11.66□□□□□ -0.54
USP28-214ENST00000545540 NOTCH3Q9UM47 2321 aa11.66□□□□□ -0.54
USP28-214ENST00000545540 FAM208BQ5VWN6 2430 aa11.66□□□□□ -0.54
USP28-214ENST00000545540 IGF1P05019 195 aa11.65□□□□□ -0.54
USP28-214ENST00000545540 RPL7P18124 248 aaKnown RBP11.65□□□□□ -0.54
USP28-214ENST00000545540 PSG9Q00887 426 aa11.65□□□□□ -0.54
USP28-214ENST00000545540 ODF3BA8MYP8 253 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 TRGV3P03979 118 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 LCNL1Q6ZST4 164 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 Q8N9W7 124 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 RNF5Q99942 180 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 C11orf21Q9P2W6 132 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 SAA4P35542 130 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 UFC1Q9Y3C8 167 aa11.64□□□□□ -0.55
USP28-214ENST00000545540 TLN2Q9Y4G6 2542 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 SFTPCP11686 197 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 BRD3OSQ6XYD6 125 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 LYPD1Q8N2G4 141 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 IGHV2-70DA0A0C4DH43 119 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 S100A7P31151 101 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 TTC9CQ8N5M4 171 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 PKD1L2Q7Z442 2459 aa11.63□□□□□ -0.55
USP28-214ENST00000545540 USP9XQ93008 2570 aaPredicted RBP11.62□□□□□ -0.55
USP28-214ENST00000545540 ACACBO00763 2458 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 TRAV30A0A087WSZ9 112 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 C7orf71A4D174 169 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 COX8AP10176 69 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 PAX2Q02962 417 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 WFDC12Q8WWY7 111 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 IFI27L1Q96BM0 104 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 LEPP41159 167 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 NBL1P41271 181 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 DEFB125Q8N687 156 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 BPESC1Q9GZL8 116 aa11.62□□□□□ -0.55
USP28-214ENST00000545540 SETD2Q9BYW2 2564 aaPredicted RBP11.62□□□□□ -0.55
USP28-214ENST00000545540 RBX1P62877 108 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 KLK15Q9H2R5 256 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 ABCA2Q9BZC7 2435 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 PRSS1P07477 247 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 GLMPQ8WWB7 406 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 C12orf54Q6X4T0 127 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 AGPAT4-IT1Q9H0P7 198 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 CBY1Q9Y3M2 126 aa11.61□□□□□ -0.55
USP28-214ENST00000545540 IGKV2D-26A0A0A0MRZ7 120 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 HBDP02042 147 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 HIST1H1AQ02539 215 aaPredicted RBP11.6□□□□□ -0.55
USP28-214ENST00000545540 PDE6HQ13956 83 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 TMEM97Q5BJF2 176 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 SAPCD1Q5SSQ6 148 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 RNF185Q96GF1 192 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 H3BUT2 72 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 IGHV3-11P01762 117 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 RPL11P62913 178 aaKnown RBP11.6□□□□□ -0.55
USP28-214ENST00000545540 CCDC140Q96MF4 163 aa11.6□□□□□ -0.55
USP28-214ENST00000545540 IGKV3D-20A0A0C4DH25 116 aa11.59□□□□□ -0.55
USP28-214ENST00000545540 M0R1W7 72 aa11.59□□□□□ -0.55
USP28-214ENST00000545540 TRBV12-3P01733 135 aa11.59□□□□□ -0.55
USP28-214ENST00000545540 SRD5A1P18405 259 aa11.59□□□□□ -0.55
USP28-214ENST00000545540 LY6EQ16553 131 aa11.59□□□□□ -0.55
USP28-214ENST00000545540 C11orf71Q6IPW1 123 aa11.59□□□□□ -0.55
USP28-214ENST00000545540 ZNF493Q6ZR52 646 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms