RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	SLC25A5	P05141	298 aa	Known RBP	11.79	□□□□□ -0.52
CHFR-223	ENST00000544268	PPP1R27	Q86WC6	154 aa		11.79	□□□□□ -0.52
CHFR-223	ENST00000544268	MTURN	Q8N3F0	131 aa		11.79	□□□□□ -0.52
CHFR-223	ENST00000544268	TEX45	Q8NA69	505 aa		11.79	□□□□□ -0.52
CHFR-223	ENST00000544268	SOX21	Q9Y651	276 aa	Predicted RBP	11.79	□□□□□ -0.52
CHFR-223	ENST00000544268	FABP2	P12104	132 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	BOD1L2	Q8IYS8	172 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	BCL6B	Q8N143	479 aa	Predicted RBP	11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	OR1L4	Q8NGR5	311 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	PSG8	Q9UQ74	426 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	GAGE12H	A6NDE8	117 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	SIVA1	O15304	175 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	GATA3	P23771	443 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	MYCNOS	P40205	109 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	LYZ	P61626	148 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	FA2H	Q7L5A8	372 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268	RPE	Q96AT9	228 aa		11.78	□□□□□ -0.52
CHFR-223	ENST00000544268		M0R1W7	72 aa		11.77	□□□□□ -0.52
CHFR-223	ENST00000544268	TIMM23	O14925	209 aa		11.77	□□□□□ -0.52
CHFR-223	ENST00000544268	SRSF12	Q8WXF0	261 aa	Known RBP	11.77	□□□□□ -0.52
CHFR-223	ENST00000544268	CITED1	Q99966	193 aa		11.77	□□□□□ -0.52
CHFR-223	ENST00000544268	C7orf69	Q9H7B7	122 aa		11.77	□□□□□ -0.52
CHFR-223	ENST00000544268	DOPEY2	Q9Y3R5	2298 aa		11.77	□□□□□ -0.52
CHFR-223	ENST00000544268	ABCA12	Q86UK0	2595 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	PLGLA	Q15195	96 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	EXOC3-AS1	Q8N2X6	119 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	OR9G4	Q8NGQ1	327 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	C10orf105	Q8TEF2	133 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	RAB37	Q96AX2	223 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	C17orf77	Q96MU5	243 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	EPDR1	Q9UM22	224 aa		11.77	□□□□□ -0.53
CHFR-223	ENST00000544268	GP9	P14770	177 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	ID1	P41134	155 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	OR4X2	Q8NGF9	303 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	PIMREG	Q9BSJ6	248 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	NBPF19	A0A087WUL8	3843 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	ABCA2	Q9BZC7	2435 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	ANKRD17	O75179	2603 aa	Known RBP	11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	HELZ2	Q9BYK8	2649 aa	Known RBP	11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	PRTN3	P24158	256 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	TMEM116	Q8NCL8	245 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	ZNF747	Q9BV97	191 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	TMUB1	Q9BVT8	246 aa		11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	F11R	Q9Y624	299 aa	Known RBP	11.76	□□□□□ -0.53
CHFR-223	ENST00000544268	IGHV4-61	A0A0C4DH41	118 aa		11.75	□□□□□ -0.53
CHFR-223	ENST00000544268	ZNF138	P52744	262 aa		11.75	□□□□□ -0.53
CHFR-223	ENST00000544268	ADAMTSL5	Q6ZMM2	481 aa		11.75	□□□□□ -0.53
CHFR-223	ENST00000544268	TSSC4	Q9Y5U2	329 aa	Predicted RBP	11.75	□□□□□ -0.53
CHFR-223	ENST00000544268	IGHV4-30-2	A0A087WSY4	118 aa		11.75	□□□□□ -0.53
CHFR-223	ENST00000544268		A8MWL6	223 aa		11.75	□□□□□ -0.53
CHFR-223	ENST00000544268	VMO1	Q7Z5L0	202 aa		11.75	□□□□□ -0.53
CHFR-223	ENST00000544268	OR11H6	Q8NGC7	330 aa		11.75	□□□□□ -0.53
CHFR-223	ENST00000544268		J3QR89	54 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	KRTAP10-9	P60411	292 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	CT83	Q5H943	113 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	SAMD5	Q5TGI4	173 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	PVRIG	Q6DKI7	326 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	FOXI2	Q6ZQN5	318 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	TRGV9	Q99603	122 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	SPATA25	Q9BR10	227 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268		Q9H3A6	140 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	RPP21	Q9H633	154 aa	Known RBP	11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	LY6L	H3BQJ8	138 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	SMAD7	O15105	426 aa	Known RBP	11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	ZNF207	O43670	478 aa	Known RBP	11.74	□□□□□ -0.53
CHFR-223	ENST00000544268	CNIH1	O95406	144 aa		11.74	□□□□□ -0.53
CHFR-223	ENST00000544268		I3L2K1	104 aa		11.73	□□□□□ -0.53
CHFR-223	ENST00000544268	IGKV1-17	P01599	117 aa		11.73	□□□□□ -0.53
CHFR-223	ENST00000544268	CIART	Q8N365	385 aa	Predicted RBP	11.73	□□□□□ -0.53
CHFR-223	ENST00000544268	PRSS22	Q9GZN4	317 aa		11.73	□□□□□ -0.53
CHFR-223	ENST00000544268	SIRPD	Q9H106	197 aa		11.73	□□□□□ -0.53
CHFR-223	ENST00000544268	NCR2	O95944	276 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	DYNAP	Q8N1N2	210 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	GTSF1	Q8WW33	167 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	PGLYRP4	Q96LB8	373 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	FASN	P49327	2511 aa	Known RBP	11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	ODF3B	A8MYP8	253 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	CHEK1	O14757	476 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	IGHV3-23	P01764	117 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	GFRA4	Q9GZZ7	299 aa		11.72	□□□□□ -0.53
CHFR-223	ENST00000544268	SMIM13	P0DJ93	91 aa		11.71	□□□□□ -0.53
CHFR-223	ENST00000544268	HOXB4	P17483	251 aa	Predicted RBP	11.71	□□□□□ -0.53
CHFR-223	ENST00000544268	CSN1S1	P47710	185 aa		11.71	□□□□□ -0.53
CHFR-223	ENST00000544268	RBPMS2	Q6ZRY4	209 aa	Known RBP	11.71	□□□□□ -0.53
CHFR-223	ENST00000544268	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	11.71	□□□□□ -0.53
CHFR-223	ENST00000544268	AP5S1	Q9NUS5	200 aa		11.71	□□□□□ -0.53
CHFR-223	ENST00000544268	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	11.71	□□□□□ -0.53
CHFR-223	ENST00000544268		K7EIM0	57 aa		11.71	□□□□□ -0.54
CHFR-223	ENST00000544268	TCRA	P04437	139 aa		11.71	□□□□□ -0.54
CHFR-223	ENST00000544268	VGLL1	Q99990	258 aa		11.71	□□□□□ -0.54
CHFR-223	ENST00000544268	DPM3	Q9P2X0	92 aa		11.71	□□□□□ -0.54
CHFR-223	ENST00000544268	HIGD1A	Q9Y241	93 aa		11.71	□□□□□ -0.54
CHFR-223	ENST00000544268	HES1	Q14469	280 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	MLST8	Q9BVC4	326 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	YAE1D1	Q9NRH1	226 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	NAV2	Q8IVL1	2488 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	APC	P25054	2843 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	IGHV3OR16-8	A0A075B7F1	116 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	ARL3	P36405	182 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms