RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 NRN1Q9NPD7 142 aa11.28□□□□□ -0.6
ECHDC1-220ENST00000528402 SMPXQ9UHP9 88 aa11.28□□□□□ -0.6
ECHDC1-220ENST00000528402 COL12A1Q99715 3063 aa11.28□□□□□ -0.6
ECHDC1-220ENST00000528402 IGHV3OR16-13A0A075B7E8 117 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 IGHV3-49A0A0A0MS15 119 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 IGHV3-74A0A0B4J1X5 117 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 TRBV7-9A0A0J9YWB2 115 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 NUPR1O60356 82 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 GPX1P07203 203 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 IGFL4Q6B9Z1 124 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 ZNF493Q6ZR52 646 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 C18orf32Q8TCD1 76 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 MYOZ3Q8TDC0 251 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 UBE2E2Q96LR5 201 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 AGPAT4-IT1Q9H0P7 198 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 ZNF702PQ9H963 129 aa11.27□□□□□ -0.6
ECHDC1-220ENST00000528402 EPG5Q9HCE0 2579 aa11.27□□□□□ -0.61
ECHDC1-220ENST00000528402 PRAC2D3DTV9 90 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 F2Z2F3 143 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 SMAD7O15105 426 aaKnown RBP11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 HOXA3O43365 443 aaPredicted RBP11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 LINC00310P59036 64 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 LINC01559Q495D7 138 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 RNF182Q8N6D2 247 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 RHPN1-AS1Q9BWJ2 59 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 LOC102724200A0A096LPH7 203 aaPredicted RBP11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 LGALS9O00182 355 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 SOCS3O14543 225 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 LGALS1P09382 135 aaKnown RBP11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 RAB4AP20338 218 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 ID1P41134 155 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 ERCC8Q13216 396 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 OR10J6PQ8NGY7 276 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 FOXC2Q99958 501 aa11.26□□□□□ -0.61
ECHDC1-220ENST00000528402 A0A1B0GUS0 222 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 ZNF324O75467 553 aaPredicted RBP11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 ARMS2P0C7Q2 107 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 CTRLP40313 264 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 IL17RELQ6ZVW7 336 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 REC114Q7Z4M0 266 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 FER1L6-AS1Q8NA97 138 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 ZNF738Q8NE65 137 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 Q8TAT8 98 aa11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 CHCHD1Q96BP2 118 aaKnown RBP11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 SSBP4Q9BWG4 385 aaPredicted RBP11.25□□□□□ -0.61
ECHDC1-220ENST00000528402 ORM1P02763 201 aa11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 PMCHP20382 165 aa11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 AMTP48728 403 aa11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 ZNF80P51504 273 aaPredicted RBP11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 PKIAP61925 76 aa11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 TMEM95Q3KNT9 176 aa11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 LYZL1Q6UWQ5 148 aa11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 PTPN13Q12923 2485 aa11.24□□□□□ -0.61
ECHDC1-220ENST00000528402 TSTD3H0UI37 97 aa11.23□□□□□ -0.61
ECHDC1-220ENST00000528402 SCGB1D1O95968 90 aa11.23□□□□□ -0.61
ECHDC1-220ENST00000528402 IGLC6P0CF74 106 aa11.23□□□□□ -0.61
ECHDC1-220ENST00000528402 TM4SF20Q53R12 229 aa11.23□□□□□ -0.61
ECHDC1-220ENST00000528402 Q71RC1 249 aaPredicted RBP11.23□□□□□ -0.61
ECHDC1-220ENST00000528402 CNFNQ9BYD5 112 aa11.23□□□□□ -0.61
ECHDC1-220ENST00000528402 USP9YO00507 2555 aaPredicted RBP11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 HSBP1O75506 76 aa11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 RPLP1P05386 114 aaKnown RBP11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 RPL11P62913 178 aaKnown RBP11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 SCGB2A2Q13296 93 aa11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 LCNL1Q6ZST4 164 aa11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 WFDC12Q8WWY7 111 aa11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 NAGKQ9UJ70 344 aa11.22□□□□□ -0.61
ECHDC1-220ENST00000528402 NIT1Q86X76 327 aa11.21□□□□□ -0.61
ECHDC1-220ENST00000528402 WFDC11Q8NEX6 87 aa11.21□□□□□ -0.61
ECHDC1-220ENST00000528402 RCHY1Q96PM5 261 aa11.21□□□□□ -0.61
ECHDC1-220ENST00000528402 TPPP3Q9BW30 176 aa11.21□□□□□ -0.61
ECHDC1-220ENST00000528402 NAV2Q8IVL1 2488 aa11.21□□□□□ -0.61
ECHDC1-220ENST00000528402 ASH1LQ9NR48 2969 aaKnown RBP11.21□□□□□ -0.62
ECHDC1-220ENST00000528402 UTP20O75691 2785 aaKnown RBP11.21□□□□□ -0.62
ECHDC1-220ENST00000528402 FAM104BQ5XKR9 115 aa11.2□□□□□ -0.62
ECHDC1-220ENST00000528402 Q6ZWC4 215 aa11.2□□□□□ -0.62
ECHDC1-220ENST00000528402 C20orf173Q96LM9 149 aa11.2□□□□□ -0.62
ECHDC1-220ENST00000528402 TMSB15BA0A087X1C1 80 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 TRAV21A0A0B4J279 112 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 M0QZ24 198 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 CD5LO43866 347 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 OR5AL1P0C617 328 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 OR8A1Q8NGG7 326 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 TMEM191AQ9H0A3 160 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 U3KQK5 164 aa11.19□□□□□ -0.62
ECHDC1-220ENST00000528402 PPBPP02775 128 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 LINC00614P0C842 121 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 CACNG7P62955 275 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 APRG1Q8IVJ8 170 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 FAM19A4Q96LR4 140 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 TMEM213A2RRL7 107 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 TWIST1Q15672 202 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 CDPF1Q6NVV7 123 aa11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 RNASEKQ6P5S7 137 aaKnown RBP11.18□□□□□ -0.62
ECHDC1-220ENST00000528402 IGKV3D-20A0A0C4DH25 116 aa11.17□□□□□ -0.62
ECHDC1-220ENST00000528402 M0R2Z0 102 aa11.17□□□□□ -0.62
ECHDC1-220ENST00000528402 ZNF705DP0CH99 300 aaPredicted RBP11.17□□□□□ -0.62
ECHDC1-220ENST00000528402 ZNF705BP0CI00 300 aaPredicted RBP11.17□□□□□ -0.62
ECHDC1-220ENST00000528402 PRB4P10163 310 aaPredicted RBP11.17□□□□□ -0.62
ECHDC1-220ENST00000528402 NTF3P20783 257 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms