RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 TSSK6Q9BXA6 273 aa3.59□□□□□ -1.83
PCF11-202ENST00000528336 C1QTNF6Q9BXI9 259 aa3.59□□□□□ -1.83
PCF11-202ENST00000528336 SAR1AQ9NR31 198 aa3.59□□□□□ -1.83
PCF11-202ENST00000528336 ZNF230Q9UIE0 474 aaPredicted RBP3.59□□□□□ -1.83
PCF11-202ENST00000528336 TNFSF18Q9UNG2 199 aa3.59□□□□□ -1.83
PCF11-202ENST00000528336 CNTRLQ7Z7A1 2325 aa3.59□□□□□ -1.84
PCF11-202ENST00000528336 CCDC88CQ9P219 2028 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 MED13Q9UHV7 2174 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 IGHV3-49A0A0A0MS15 119 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 TRAV17A0A0B4J275 112 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 TRBV7-6A0A0J9YX20 115 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 A0A1W2PP18 115 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 BBIP1A8MTZ0 92 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 GABARAPH6UMI1 98 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 K7EM74 188 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 M0R378 163 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 UBE2L6O14933 153 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 CPSF4O95639 269 aaKnown RBP3.58□□□□□ -1.84
PCF11-202ENST00000528336 APCSP02743 223 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 HMGN2P05204 90 aaKnown RBP3.58□□□□□ -1.84
PCF11-202ENST00000528336 TLX1NBP0CAT3 122 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 S100A2P29034 98 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 TAS2R45P59539 299 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 NNATQ16517 81 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 LGALS9BQ3B8N2 356 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 ZNF791Q3KP31 576 aaPredicted RBP3.58□□□□□ -1.84
PCF11-202ENST00000528336 SP6Q3SY56 376 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 LUZP6Q538Z0 58 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 LGALS9CQ6DKI2 356 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 RPL22L1Q6P5R6 122 aaKnown RBP3.58□□□□□ -1.84
PCF11-202ENST00000528336 C16orf47Q6ZP98 133 aaPredicted RBP3.58□□□□□ -1.84
PCF11-202ENST00000528336 Q6ZS92 163 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 NTM-AS1Q6ZSK4 140 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 ZNF695Q8IW36 515 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 MSRB3Q8IXL7 192 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 TMEM256Q8N2U0 113 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 ZNF709Q8N972 641 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 DCANP1Q8TF63 244 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 TMEM133Q9H2Q1 129 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 TAF9BQ9HBM6 251 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 CCDC167Q9P0B6 97 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 EML6Q6ZMW3 1958 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 DSCAMO60469 2012 aa3.58□□□□□ -1.84
PCF11-202ENST00000528336 C20orf202A1L168 122 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 TAX1BP3O14907 124 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 ZNF324O75467 553 aaPredicted RBP3.57□□□□□ -1.84
PCF11-202ENST00000528336 GPX1P07203 203 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST1H2BOP23527 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 PSMB8P28062 276 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST1H2BBP33778 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST1H2BDP58876 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST1H2BCP62807 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST2H2BEQ16778 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.57□□□□□ -1.84
PCF11-202ENST00000528336 OR5C1Q8NGR4 320 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 TMEM158Q8WZ71 300 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST1H2BHQ93079 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST1H2BNQ99877 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 HIST1H2BMQ99879 126 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 NIT2Q9NQR4 276 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 NAT8Q9UHE5 227 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 ZNF835Q9Y2P0 537 aa3.57□□□□□ -1.84
PCF11-202ENST00000528336 CHCHD2Q9Y6H1 151 aaPredicted RBP3.57□□□□□ -1.84
PCF11-202ENST00000528336 PRRC2CQ9Y520 2896 aaKnown RBP3.57□□□□□ -1.84
PCF11-202ENST00000528336 ZNF462Q96JM2 2506 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 COL6A6A6NMZ7 2263 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 DOCK10Q96BY6 2186 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 LOC107984640A0A0U1RRK4 108 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 BUB1B-PAK6H3BSN5 160 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 HMGN4O00479 90 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 NCR2O95944 276 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 LINC00694P0DN24 101 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 CGB3P0DN86 165 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 CGB7P0DN87 165 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 CCL3P10147 92 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 NFYBP25208 207 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 ATP6V0CP27449 155 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 TAS2R20P59543 309 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 EBI3Q14213 229 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 ZNF141Q15928 474 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 VMA21Q3ZAQ7 101 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 Q8N976 141 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 ZFP62Q8NB50 900 aaPredicted RBP3.56□□□□□ -1.84
PCF11-202ENST00000528336 OR4S1Q8NGB4 309 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 OR5D16Q8NGK9 328 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 OR4K13Q8NH42 304 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 SDF2Q99470 211 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 CST9LQ9H4G1 147 aa3.56□□□□□ -1.84
PCF11-202ENST00000528336 RP1L1Q8IWN7 2480 aaPredicted RBP3.55□□□□□ -1.84
PCF11-202ENST00000528336 SMG1Q96Q15 3661 aaKnown RBP3.55□□□□□ -1.84
PCF11-202ENST00000528336 DSPPQ9NZW4 1301 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 NCKAP5O14513 1909 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 IGLV3-32A0A0A0MS00 114 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 IGHV3-21A0A0B4J1V1 117 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 A0A0G2JMM0 328 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 IGHV3-64DA0A0J9YX35 117 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 A0A1W2PPB8 328 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 A0A1W2PQD3 144 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 A0A1W2PRS3 328 aa3.55□□□□□ -1.84
PCF11-202ENST00000528336 IRGMA1A4Y4 181 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms