RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PTH2Q96A98 100 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 YPEL2Q96QA6 119 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 COL6A6A6NMZ7 2263 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 A0A1W2PRX2 142 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 PRB2P02812 416 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 RNF144BQ7Z419 303 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 IMMP1LQ96LU5 166 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 hADV29S1A0JD25 119 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 NDUFV3P56181 108 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 VWC2Q2TAL6 325 aa7.1□□□□□ -1.27
LIMCH1-218ENST00000513024 MP68P56378 58 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 IL17RELQ6ZVW7 336 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 ZCCHC24Q8N2G6 241 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 C1orf159Q96HA4 380 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 IGKV3D-7A0A0C4DH55 119 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 PRCDQ00LT1 54 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 EXOC3-AS1Q8N2X6 119 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 HELZP42694 1942 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 DUSP14O95147 198 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 IGKV1-5P01602 117 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 COA6Q5JTJ3 125 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 ZNF474Q6S9Z5 364 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 C2orf66Q6UXQ4 117 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 ZFP2Q6ZN57 461 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 FGFBP3Q8TAT2 258 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 ITLN2Q8WWU7 325 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 LINC00312Q9Y6C7 94 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 DOCK7Q96N67 2140 aa7.09□□□□□ -1.27
LIMCH1-218ENST00000513024 TRAV13-2A0A0B4J235 113 aa7.09□□□□□ -1.28
LIMCH1-218ENST00000513024 PMS2P5A8MQ11 134 aa7.09□□□□□ -1.28
LIMCH1-218ENST00000513024 HLA-DRB4P13762 266 aa7.09□□□□□ -1.28
LIMCH1-218ENST00000513024 CLUHP3Q96NS8 147 aa7.09□□□□□ -1.28
LIMCH1-218ENST00000513024 HLA-DRB4X5D2U9 266 aa7.09□□□□□ -1.28
LIMCH1-218ENST00000513024 TRAV25A0A0B4J276 109 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 F8VRH5 84 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 NTN3O00634 580 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 PRB1P04280 392 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 IGHV1-2P23083 117 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 CXCL5P42830 114 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 FOXF2Q12947 444 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 TMEM14EPQ6UXP3 125 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 IL17DQ8TAD2 202 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 TCF20Q9UGU0 1960 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 NDUFC2-KCTD14E9PQ53 114 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 CHKB-CPT1BH3BT56 60 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 OVOL1O14753 267 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 TMEM141Q96I45 108 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 LIME1Q9H400 295 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 MRPL35Q9NZE8 188 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 SCN5AQ14524 2016 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 SH2D1AO60880 128 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 CR1LQ2VPA4 569 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 UBE2E2Q96LR5 201 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 NDUFA12Q9UI09 145 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 LINC00527Q9UJ94 153 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 TRAV12-2A0A075B6T6 113 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 ARMS2P0C7Q2 107 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 RPL36AP83881 106 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 MYO7BQ6PIF6 2116 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 ATP6V0E2Q8NHE4 81 aa7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 RPL36ALQ969Q0 106 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-218ENST00000513024 IGKV1-27A0A075B6S5 117 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 TRGV4A0A0C4DH28 118 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 ERCC8Q13216 396 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 FRMPD3Q5JV73 1810 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 A0A087WX48 190 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 C5orf63A6NC05 138 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 SRSF7Q16629 238 aaKnown RBP eCLIP7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 C14orf178Q8N769 122 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 Q8N8P6 123 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 MPLKIPQ8TAP9 179 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 FANCMQ8IYD8 2048 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 IGKV2-40A0A087WW87 121 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 IGKV2D-40P01614 121 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 HTN3P15516 51 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 COLCA1Q6ZS62 124 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 FAM236DA0A1B0GTK5 79 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 J3QLI3 93 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 RHODO00212 210 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 FAM236CP0DP71 79 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 C3orf36Q3SXR2 165 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 ZNF581Q9P0T4 197 aa7.07□□□□□ -1.28
LIMCH1-218ENST00000513024 TRAV3A0A0B4J244 114 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 NBR2O15453 112 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 CRYGBP07316 175 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 Q6ZUT4 128 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 TMEM167AQ8TBQ9 72 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 TRBV19A0A075B6N1 114 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 LINC00205P59089 165 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 LINC00479Q96M42 142 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 RETNQ9HD89 108 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 TP53TG1Q9Y2A0 90 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 RANBP2P49792 3224 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 USF3Q68DE3 2245 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 C17orf100A8MU93 164 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 PSCAO43653 123 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 NTF4P34130 210 aa7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 ZNF106Q9H2Y7 1883 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-218ENST00000513024 A0A0G2JRQ6 117 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms